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Submitted SNP(ss) Details: ss2089189           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0800021
RefSNP(rs#)rs1320758
Submitted Batch ID001018_25
Submitted DateOct 19, 2000
Publication CitedN.D.
First entry to dbSNPOct 19 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2089189|allelePos=165|len=589|taxid=9606|alleles='A/T'|mol=Genomic
 TCTGCCTTTT CCTATGTGGC TTTCTTCAAA AATATCAGTC TAAAAATCAT TCAGTAAAAT
 AGTTCTCAAA ACCTAGCTCA GACACTGTTC TCTGCAACTC TTCTATAACA ACACAAAATA
 AGACCAATCT CTTTTCTCGA TACATCCACT ATTACCCTTT CTCA
 W
 CATGCCTGCT ATTGTTTATA ATACCAGATT CCACTTAGTA TTTTACCTCC CTACGTTCTC
 TATTTGATTG TTTAAGTTTT GAATTCAAGA ACTGTTTCTT ATGAAATCTT TTACTATAAG
 AGCCAACCAT TGTGCTTTTT ACGTGAGGTG TTTACCAAAT GTCTCCTGAT ACTTTTTTGA
 AAGGCTGTGA CTATAACCTC ACTAAATAGT TATGACATAA GGAGCCTTTT TTTCAGATTA
 CTAATACCAC TTTGATTTTA TTTTCATAAA ACTGAAAAGA ACTATGACAA ACCACTTGCA
 ATGCTGTTCT TTAACACATA ATGAGCAAAT AAAATGCTTC AAAATAAATA TGTATATTCA
 GTTGATGGGA ATAATACTCA TTTTTTGTCC AAGTATGCAC ACTTTATTCT TTTGTTAATA
 CTAT

  Submitted Frequency for ss2089189 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184T=0.51999998
A=0.47999999
0.499 +/-0.0041_2004SEQUENOM


  dbSNP summary of Genotypes for ss2089189 back to top
No sufficient data to compute Hardy-weinberg probability for ss2089189.


  Submitted individual genotype for ss2089189 back to top
There is no individual genotype data for ss2089189.

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