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Submitted SNP(ss) Details: ss2089186           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0800017
RefSNP(rs#)rs1320757
Submitted Batch ID001018_25
Submitted DateOct 19, 2000
Publication CitedN.D.
First entry to dbSNPOct 19 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2089186|allelePos=222|len=604|taxid=9606|alleles='C/G'|mol=Genomic
 ATTCACCTAC ATGGGATAGT AATATAGTTT TATTGGAAGG CTGAAGAATT ACCATAAATT
 TTAATGGAAA GTTCTTTTTA ATGTATTAGA TATTTTTTGA CGATCCATTT TAGTAGAATG
 ACTTTTGTTT TCAAAAGCAT ATATAAACCA AAACTTAAAC TATGCTTTAG CTACTGATGT
 GGAGGAATGA TGATGATGTC AGTCTGTAAA GAACAATTCC A
 S
 CAGCAAAACA TTTAATAAAG TGTTTCTCCT TGAATGCTAT GATGGTATCA TGCCAGTGAA
 AATAGAAGAT TGATGTAAAA ACAATGTCAC TCTTAACTTG CTTAAAAAAA CTTTTTATGA
 ACATATTTCT CCTATATAAA CAAAAAAGTT TCTTATATCA CTATATAAAG ACCTTTAAGG
 GTGTGTATTA GAATCATAAT ACtaataatt aacattgact aaatgcacat tatgagtcta
 tactttccta aagcacttta catttataat gtcacttaat tcttgcacta gaactgtaca
 tttggtgttt taatagctcc agtttacaga tgaggaaact gaggaacaga aaagttaagt
 aattagtcta aACTGAATAG GT

  Submitted Frequency for ss2089186 back to top
There is no frequency submission for ss2089186.


  dbSNP summary of Genotypes for ss2089186 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.80000001
G=0.20000000C/C=0.64999998
C/G=0.30000001
G/G=0.05000000
Pr(chiSq=0.234,df=1)
=0.655
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.86666667
G=0.13333334C/C=0.75555557
C/G=0.22222222
G/G=0.02222222
Pr(chiSq=0.067,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090C=0.91111112
G=0.08888889C/C=0.82222223
C/G=0.17777778
Pr(chiSq=0.073,df=1)
=1.000
Genotype
Freq.
HapMap-YRI118118C=0.77966100
G=0.22033899C/C=0.57627118
C/G=0.40677965
G/G=0.01694915
Pr(chiSq=1.996,df=1)
=0.200
Genotype
Freq.

  Submitted individual genotype for ss2089186 back to top
There is no individual genotype data for ss2089186.

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