NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss1313553           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0153275
RefSNP(rs#)rs885883
Submitted Batch IDTSC-SANGER-19-26-000905-RESUBMISSION
Submitted DateSep 06, 2000
Publication CitedN.D.
First entry to dbSNPSep 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1313553|allelePos=292|len=455|taxid=9606|alleles='A/G'|mol=Genomic
 AATGCCCATT CTACTGACAT AAGTTTCTCT TTATAATTTG GTTCCAACTA TGGAGAAAAA
 CGTGACCCTA TATTTGTCTG AATCTAACCT CAGAATCTGC TGCATTGCTC TAGGAGATTC
 ACAAATTGAA CACAAGTGAG CTGTTTATTC TCATAAAAAT GTACATATTT GAGAATTTCA
 ATGTATTGCC CAGAACCTGT GCATGCCAAC AACTGTGTTT CTCAGCGCAC TCTTGGCCTG
 GTGAAGCCCT CACAGACCCT CTCCCTTACC TGCGCTGTGT CTGTGTTCCC C
 R
 TGATAACGAG GTCTTCCTGC TGAAGCTGGA TCCATCAGCC CCCCAGGGAA GGGAATGGAG
 TGGATTGGGT GCATAGGTCA TGAAGGGAGC ACACATTACC ACCCACTCCT CAAGTGTCCA
 GTCACCATCC CCAGATCCGT GTCCAAAAAA GCAGTTCTTC CTA

  Submitted Frequency for ss1313553 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
CEPH
- MULTI-NATIONAL 		184A=0.61000001
G=0.38999999
0.476 +/-0.0221_2004SEQUENOM


  dbSNP summary of Genotypes for ss1313553 back to top
No sufficient data to compute Hardy-weinberg probability for ss1313553.


  Submitted individual genotype for ss1313553 back to top
There is no individual genotype data for ss1313553.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement