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Submitted SNP(ss) Details: ss1313550           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0153270
RefSNP(rs#)rs557115
Submitted Batch IDTSC-SANGER-19-26-000905-RESUBMISSION
Submitted DateSep 06, 2000
Publication CitedN.D.
First entry to dbSNPSep 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1313550|allelePos=495|len=577|taxid=9606|alleles='C/T'|mol=Genomic
 CTCCACCCAT GACCCCATCC ATGGCTCCCC TGGCCTCGCC TCATCTCTGC CAACCTATAT
 TCCTCTTGCT TCGAGTGAAG CTCTTTCCCT ATAATTTTCC TTCATCTCCT GATCAATAAA
 ACCTGGATTT ACAGGCCAAG AAGAAGCAAA CAAAAAGTAC CCGTGAGCTG GTCTAAACTA
 GCTTTCATCG AGAAATGCAG CACAAATAAA ATGAGTGATT GGTGAGGGGT GAGTTTTGTT
 TAACTGGGCT TATTCTGGTT GAGAAGCAAG CTCACATCAA CTTGGCCATG CAGGAGTAAT
 GTGACTGTCC CCAATTCTGT CAAAAACAAC AGCAGACTAA ACTCCCTGGC CTCACAGCTA
 GCCACTTCTG AGGATGAGGC TTACCATGCA CTCAGGACTA CGAGCCTTTT CCAAATGTTC
 TCTTGTCTAC AACCCTCTGA GCGTGGTGCA AATATTAATT AGTGTTTCTA ATGTCGCCTC
 GCACTGTCAT TATC
 Y
 GTTGATGAAG AGACAGACGT GTCTCCGACA ACATCCAGGC CAGCCAAGGT GACATTGCTT
 TCCTTTGCTC CAAAGCTGTA TT

  Submitted Frequency for ss1313550 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184T=0.85000002
C=0.15000001
0.255 +/-0.0521_2004SEQUENOM


  dbSNP summary of Genotypes for ss1313550 back to top
No sufficient data to compute Hardy-weinberg probability for ss1313550.


  Submitted individual genotype for ss1313550 back to top
There is no individual genotype data for ss1313550.

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