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Submitted SNP(ss) Details: ss1313539           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0153253
RefSNP(rs#)rs7067
Submitted Batch IDTSC-SANGER-19-26-000905-RESUBMISSION
Submitted DateSep 06, 2000
Publication CitedN.D.
First entry to dbSNPSep 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 4
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1313539|allelePos=196|len=598|taxid=9606|alleles='C/T'|mol=Genomic
 CTGTCACTAG TGGTAGTGAC TTGCTTTTCC TGTGCACACA TGTAGCCCAT CAGGACAGCG
 AGCCGACGGG TCACGCCAGG GGCCGGCACG CACTGGCACC TGGCCCCAGG AGCGGGGCCG
 TGTGAACGGT GATGAATGTT GAAAATGCGT CTCAGAGAGG TATTCACATG AACTTTGTAT
 GAGACTTATT TATAT
 Y
 TTTAACATAA AGGTTTGATA AAGAACTTAG GGATTAAAAA AAAGATGGAG TTTTCTAACG
 TGAGGATGAA GTCTACACTT CAGATTAAAA AGGGTTATGT TGTATCCTGC TGTCTTGTGG
 GGGCTCAAGA CCTGCCTGCC TTACCACCAG GGCCTCCGTC CTGGGGAAGC AGGCTGACAG
 AGCAGGGTGC TCCTGCTGTC TAGCGGGGGC TCTGCCTTGT GACCTGTGCA TATCCTTGGG
 GTCAGGGGCA CAGAGCCTCT CCCTGACCTC TTGGGGATGC TTTGGAGTCT GGGGCTGGGA
 TTGGCCTGTC TTGGTGAGCT CACTCAGACC TGCACCAGCT CTGCGTGGGC CACACGGAGG
 AGGAGACAGC TCCTCCCCTC TGCAGTGCCC TTGGGAATAG TC

  Submitted Frequency for ss1313539 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
TSC_42_C
NORTH AMERICA
82T=0.68000001
C=0.31999999
0.435 +/-0.052TSC-ORCHID-TSC_42_C-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
CEPH
MULTI-NATIONAL
184T=0.79000002
C=0.20999999
0.332 +/-0.0491_2004SEQUENOM
TSC_42_AA
NORTH AMERICA
80C=0.73000002
T=0.28000000
0.389 +/-0.061TSC-ORCHID-TSC_42_AA-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
TSC_42_A
EAST ASIA
84T=0.75999999
C=0.23999999
0.365 +/-0.069TSC-ORCHID-TSC_42_A-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL


  dbSNP summary of Genotypes for ss1313539 back to top
No sufficient data to compute Hardy-weinberg probability for ss1313539.


  Submitted individual genotype for ss1313539 back to top
There is no individual genotype data for ss1313539.

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