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Items: 1 to 20 of 25

1.
CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses
Maja Vukic, Jihed Chouaref, Veronica Della Chiara, Serkan Dogan, Fallon Ratner, Jenna Z. M. Hogenboom, Trevor A. Epp, Kallayanee Chawengsaksophak, Kelly K. D. Vonk, Cor Breukel, Yavuz Ariyurek, David San Leon Granado, Susan L. Kloet, Lucia Daxinger
Sci Adv. 2024 Feb 9; 10(6): eadk3384. Published online 2024 Feb 9. doi: 10.1126/sciadv.adk3384
PMCID:
PMC10857554
AbstractArticlePDF–9.3M
2.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
3.
The ZBTB24-CDCA7 axis regulates HELLS enrichment at centromeric satellite repeats to facilitate DNA methylation
Swanand Hardikar, Zhengzhou Ying, Yang Zeng, Hongbo Zhao, Bigang Liu, Nicolas Veland, Kevin McBride, Xiaodong Cheng, Taiping Chen
Protein Cell. 2020 Mar; 11(3): 214–218. Published online 2020 Jan 22. doi: 10.1007/s13238-019-00682-w
PMCID:
PMC7026229
ArticlePDF–473K
4.
Structural basis of specific DNA binding by the transcription factor ZBTB24
Ren Ren, Swanand Hardikar, John R Horton, Yue Lu, Yang Zeng, Anup K Singh, Kevin Lin, Luis Della Coletta, Jianjun Shen, Celine Shuet Lin Kong, Hideharu Hashimoto, Xing Zhang, Taiping Chen, Xiaodong Cheng
Nucleic Acids Res. 2019 Sep 19; 47(16): 8388–8398. Published online 2019 Jun 21. doi: 10.1093/nar/gkz557
PMCID:
PMC6895263
AbstractArticlePDF–3.9M
5.
Single-cell transcriptomic analysis of mouse neocortical development
Lipin Loo, Jeremy M. Simon, Lei Xing, Eric S. McCoy, Jesse K. Niehaus, Jiami Guo, E. S. Anton, Mark J. Zylka
Nat Commun. 2019; 10: 134. Published online 2019 Jan 11. doi: 10.1038/s41467-018-08079-9
PMCID:
PMC6329831
AbstractArticlePDF–3.6M
6.
SP8 and SP9 coordinately promote D2-type medium spiny neuron production by activating Six3 expression
Zhejun Xu, Qifei Liang, Xiaolei Song, Zhuangzhi Zhang, Susan Lindtner, Zhenmeiyu Li, Yan Wen, Guoping Liu, Teng Guo, Dashi Qi, Min Wang, Chunyang Wang, Hao Li, Yan You, Xin Wang, Bin Chen, Hua Feng, John L. Rubenstein, Zhengang Yang
Development. 2018 Jul 15; 145(14): dev165456. Published online 2018 Jul 23. doi: 10.1242/dev.165456
PMCID:
PMC6078334
AbstractArticle
7.
Cellular heterogeneity in the ureteric progenitor niche and distinct profiles of branching morphogenesis in organ development
Elisabeth A. Rutledge, Jean-Denis Benazet, Andrew P. McMahon
Development. 2017 Sep 1; 144(17): 3177–3188. doi: 10.1242/dev.149112
PMCID:
PMC5611955
AbstractArticle
8.
Lateral cortical Cdca7 expression levels are regulated by Pax6 and influence the production of intermediate progenitors
Yu-Ting Huang, John O. Mason, David J. Price
BMC Neurosci. 2017; 18: 47. Published online 2017 Jun 5. doi: 10.1186/s12868-017-0365-0
PMCID:
PMC5460507
AbstractArticlePDF–7.2M
9.
Transcriptional Networks Controlled by NKX2-1 in the Development of Forebrain GABAergic Neurons
Magnus Sandberg, Pierre Flandin, Shanni Silberberg, Linda Su-Feher, James D. Price, Jia Sheng Hu, Carol Kim, Axel Visel, Alex S. Nord, John L.R. Rubenstein
Neuron. Author manuscript; available in PMC 2017 Feb 21.
Published in final edited form as: Neuron. 2016 Sep 21; 91(6): 1260–1275. doi: 10.1016/j.neuron.2016.08.020
PMCID:
PMC5319854
AbstractArticlePDF–1.0M
10.
Radial glia require PDGFD/PDGFRß signaling in human but not mouse neocortex
Jan H. Lui, Tomasz J. Nowakowski, Alex A. Pollen, Ashkan Javaherian, Arnold R. Kriegstein, Michael C. Oldham
Nature. Author manuscript; available in PMC 2015 May 13.
Published in final edited form as: Nature. 2014 Nov 13; 515(7526): 264–268. doi: 10.1038/nature13973
PMCID:
PMC4231536
AbstractArticlePDF–11M
11.
Pax6 Exerts Regional Control of Cortical Progenitor Proliferation via Direct Repression of Cdk6 and Hypophosphorylation of pRb
Da Mi, Catherine B. Carr, Petrina A. Georgala, Yu-Ting Huang, Martine N. Manuel, Emily Jeanes, Emi Niisato, Stephen N. Sansom, Frederick J. Livesey, Thomas Theil, Kerstin Hasenpusch-Theil, T. Ian Simpson, John O. Mason, David J. Price
Neuron. 2013 Apr 24; 78(2): 269–284. doi: 10.1016/j.neuron.2013.02.012
PMCID:
PMC3898967
AbstractArticlePDF–2.5M
12.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
13.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
14.
A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets
Diogo S. Castro, Ben Martynoga, Carlos Parras, Vidya Ramesh, Emilie Pacary, Caroline Johnston, Daniela Drechsel, Mélanie Lebel-Potter, Laura Galinanes Garcia, Charles Hunt, Dirk Dolle, Angela Bithell, Laurence Ettwiller, Noel Buckley, François Guillemot
Genes Dev. 2011 May 1; 25(9): 930–945. doi: 10.1101/gad.627811
PMCID:
PMC3084027
AbstractArticlePDF–1.7M
15.
The Level of the Transcription Factor Pax6 Is Essential for Controlling the Balance between Neural Stem Cell Self-Renewal and Neurogenesis
Stephen N. Sansom, Dean S. Griffiths, Andrea Faedo, Dirk-Jan Kleinjan, Youlin Ruan, James Smith, Veronica van Heyningen, John L. Rubenstein, Frederick J. Livesey
PLoS Genet. 2009 Jun; 5(6): e1000511. Published online 2009 Jun 12. doi: 10.1371/journal.pgen.1000511
PMCID:
PMC2686252
AbstractArticlePDF–4.5M
16.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
17.
The Myc Target Gene JPO1/CDCA7 is Frequently Over-expressed in Human Tumors and has Limited Transforming Activity In Vivo
Rebecca C. Osthus, Baktiar Karim, Julia E. Prescott, B. Douglas Smith, Michael McDevitt, David L. Huso, Chi V. Dang
Cancer Res. Author manuscript; available in PMC 2006 Jul 1.
Published in final edited form as: Cancer Res. 2005 Jul 1; 65(13): 5620–5627. doi: 10.1158/0008-5472.CAN-05-0536
PMCID:
PMC1224734
AbstractArticlePDF–1.7M
18.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
19.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
20.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M

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