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Items: 17

1.
A comparison of gene expression in mouse liver and kidney in obstructive cholestasis utilizing high-density oligonucleotide microarray technology
Gerald U Denk, Shi-Ying Cai, Wen-Sheng Chen, Aiping Lin, Carol J Soroka, James L Boyer
World J Gastroenterol. 2006 Apr 28; 12(16): 2536–2548. Published online 2006 Apr 28. doi: 10.3748/wjg.v12.i16.2536
PMCID:
PMC4087986
ArticlePDF–880K
2.
Genome-wide comparative analysis revealed significant transcriptome changes in mice after Toxoplasma gondii infection
Boyin Jia, Huijun Lu, Quan Liu, Jigang Yin, Ning Jiang, Qijun Chen
Parasit Vectors. 2013; 6: 161. Published online 2013 Jun 4. doi: 10.1186/1756-3305-6-161
PMCID:
PMC3679772
ArticlePDF–1016K
3.
Global Gene Expression Profiling in Interleukin-12-Induced Activation of CD8+ Cytotoxic T Lymphocytes against Mouse Mammary Carcinoma
Shanjin Cao, Zhaoying Xiang, Xiaojing Ma
Cell Mol Immunol. Author manuscript; available in PMC 2010 Oct 27.
Published in final edited form as: Cell Mol Immunol. 2004 Oct; 1(5): 357–366.
PMCID:
PMC2965067
ArticlePDF–138K
4.
Parameters for accurate genome alignment
Martin C Frith, Michiaki Hamada, Paul Horton
BMC Bioinformatics. 2010; 11: 80. Published online 2010 Feb 9. doi: 10.1186/1471-2105-11-80
PMCID:
PMC2829014
ArticlePDF–1.2M
5.
pRb-Independent Growth Arrest and Transcriptional Regulation of E2F Target Genes
Michael T McCabe, Odinaka J Azih, Mark L Day
Neoplasia. 2005 Feb; 7(2): 141–151. doi: 10.1593/neo.04394
PMCID:
PMC1501127
ArticlePDF–339K
6.
A hybrid neural network system for prediction and recognition of promoter regions in human genome
Chuan-bo Chen, Tao Li
J Zhejiang Univ Sci B. 2005 May; 6(5): 401–407. Published online 2005 Apr 10. doi: 10.1631/jzus.2005.B0401
PMCID:
PMC1389758
ArticlePDF–222K
7.
Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes
Kanae Kikugawa, Kazutaka Katoh, Shigehiro Kuraku, Hiroshi Sakurai, Osamu Ishida, Naoyuki Iwabe, Takashi Miyata
BMC Biol. 2004; 2: 3. Published online 2004 Mar 11. doi: 10.1186/1741-7007-2-3
PMCID:
PMC387836
ArticlePDF–342K
8.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
ArticlePDF–3.4M
9.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
ArticlePDF–1.4M
10.
Comparative Analysis of Noncoding Regions of 77 Orthologous Mouse and Human Gene Pairs
Niclas Jareborg, Ewan Birney, Richard Durbin
Genome Res. 1999 Sep; 9(9): 815–824. doi: 10.1101/gr.9.9.815
PMCID:
PMC310816
ArticlePDF–709K
11.
Analysis of the Quality and Utility of Random Shotgun Sequencing at Low Redundancies
John Bouck, Webb Miller, James H. Gorrell, Donna Muzny, Richard A. Gibbs
Genome Res. 1998 Oct; 8(10): 1074–1084. doi: 10.1101/gr.8.10.1074
PMCID:
PMC310787
ArticlePDF–5.0M
12.
A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence
Liliana Florea, George Hartzell, Zheng Zhang, Gerald M. Rubin, Webb Miller
Genome Res. 1998 Sep; 8(9): 967–974. doi: 10.1101/gr.8.9.967
PMCID:
PMC310774
ArticlePDF–80K
13.
Gene structure prediction in syntenic DNA segments
Jonathan E. Moore, James A. Lake
Nucleic Acids Res. 2003 Dec 15; 31(24): 7271–7279. doi: 10.1093/nar/gkg905
PMCID:
PMC291857
ArticlePDF–367K
14.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
ArticlePDF–118K
15.
Utility and distribution of conserved noncoding sequences in the grasses
Nicholas J. Kaplinsky, David M. Braun, Jon Penterman, Stephen A. Goff, Michael Freeling
Proc Natl Acad Sci U S A. 2002 Apr 30; 99(9): 6147–6151. Published online 2002 Apr 23. doi: 10.1073/pnas.052139599
PMCID:
PMC122917
ArticlePDF–138K
16.
Association between divergence and interspersed repeats in mammalian noncoding genomic DNA
Francesca Chiaromonte, Shan Yang, Laura Elnitski, Von Bing Yap, Webb Miller, Ross C. Hardison
Proc Natl Acad Sci U S A. 2001 Dec 4; 98(25): 14503–14508. Published online 2001 Nov 20. doi: 10.1073/pnas.251423898
PMCID:
PMC64711
ArticlePDF–410K
17.
Twenty proteins containing a C-terminal SOCS box form five structural classes
Douglas J. Hilton, Rachael T. Richardson, Warren S. Alexander, Elizabeth M. Viney, Tracy A. Willson, Naomi S. Sprigg, Robyn Starr, Sandra E. Nicholson, Donald Metcalf, Nicos A. Nicola
Proc Natl Acad Sci U S A. 1998 Jan 6; 95(1): 114–119. doi: 10.1073/pnas.95.1.114
PMCID:
PMC18144
ArticlePDF–748K

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