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Select item 75157071.

Genome maintenance functions of a putative Trypanosoma brucei translesion DNA polymerase include telomere association and a role in antigenic variation

Andrea Zurita Leal, Marie Schwebs, Emma Briggs, Nadine Weisert, Helena Reis, Leandro Lemgruber, Katarina Luko, Jonathan Wilkes, Falk Butter, Richard McCulloch, Christian J Janzen

Nucleic Acids Res. 2020 Sep 25; 48(17): 9660–9680. Published online 2020 Sep 5. doi: 10.1093/nar/gkaa686

PMCID:: PMC7515707

Abstract Article PDF–5.3M

Select item 57532772.

PRODORIC2: the bacterial gene regulation database in 2018

Denitsa Eckweiler, Christian-Alexander Dudek, Juliane Hartlich, David Brötje, Dieter Jahn

Nucleic Acids Res. 2018 Jan 4; 46(Database issue): D320–D326. Published online 2017 Nov 9. doi: 10.1093/nar/gkx1091

PMCID:: PMC5753277

Abstract Article PDF–2.2M

Select item 67815713.

The BioCyc collection of microbial genomes and metabolic pathways

Peter D Karp, Richard Billington, Ron Caspi, Carol A Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M Keseler, Markus Krummenacker, Peter E Midford, Quang Ong, Wai Kit Ong, Suzanne M Paley, Pallavi Subhraveti

Brief Bioinform. 2019 Jul; 20(4): 1085–1093. Published online 2017 Aug 17. doi: 10.1093/bib/bbx085

PMCID:: PMC6781571

Abstract Article PDF–885K

Select item 40207914.

Protein Languages Differ Depending on Microorganism Lifestyle

Joseph J. Grzymski, Adam G. Marsh

PLoS One. 2014; 9(5): e96910. Published online 2014 May 14. doi: 10.1371/journal.pone.0096910

PMCID:: PMC4020791

Abstract Article PDF–1.7M

Select item 42349795.

The genome of Clostridium difficile 5.3

Aaron E Darling, Paul Worden, Toni A Chapman, Piklu Roy Chowdhury, Ian G Charles, Steven P Djordjevic

Gut Pathog. 2014; 6: 4. Published online 2014 Feb 24. doi: 10.1186/1757-4749-6-4

PMCID:: PMC4234979

Abstract Article PDF–766K

Select item 31942356.

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

Bo Liu, Theodore Gibbons, Mohammad Ghodsi, Todd Treangen, Mihai Pop

BMC Genomics. 2011; 12(Suppl 2): S4. Published online 2011 Jul 27. doi: 10.1186/1471-2164-12-S2-S4

PMCID:: PMC3194235

Abstract Article PDF–1.7M

Select item 30935447.

Phylogenetic Distribution and Evolutionary History of Bacterial DEAD-Box Proteins

Varinia López-Ramírez, Luis D. Alcaraz, Gabriel Moreno-Hagelsieb, Gabriela Olmedo-Álvarez

J Mol Evol. 2011; 72(4): 413–431. Published online 2011 Mar 25. doi: 10.1007/s00239-011-9441-8

PMCID:: PMC3093544

Abstract Article PDF–9.0M

Select item 26526158.

The RepA_N replicons of Gram-positive bacteria: a family of broadly distributed but narrow host range plasmids

Keith E. Weaver, Stephen M. Kwong, Neville Firth, Maria Victoria Francia

Plasmid. Author manuscript; available in PMC 2010 Mar 1.

Published in final edited form as: Plasmid. 2009 Mar; 61(2): 94–109. Published online 2009 Jan 6. doi: 10.1016/j.plasmid.2008.11.004

PMCID:: PMC2652615

Abstract Article PDF–2.3M

Select item 26029869.

A Systematic Survey of Mini-Proteins in Bacteria and Archaea

Fengyu Wang, Jingfa Xiao, Linlin Pan, Ming Yang, Guoqiang Zhang, Shouguang Jin, Jun Yu

PLoS One. 2008; 3(12): e4027. Published online 2008 Dec 24. doi: 10.1371/journal.pone.0004027

PMCID:: PMC2602986

Abstract Article PDF–310K

Select item 197480910.

Linear chromosomes in bacteria: no straight edge advantage?

Michael Y Galperin

Environ Microbiol. 2007 May; 9(6): 1357–1362. doi: 10.1111/j.1462-2920.2007.01328.x

PMCID:: PMC1974809

Article PDF–85K

Select item 55065511.

The PECACE domain: a new family of enzymes with potential peptidoglycan cleavage activity in Gram-positive bacteria

Estelle Pagliero, Otto Dideberg, Thierry Vernet, Anne Marie Di Guilmi

BMC Genomics. 2005; 6: 19. Published online 2005 Feb 17. doi: 10.1186/1471-2164-6-19

PMCID:: PMC550655

Abstract Article PDF–379K

Select item 996362512.

Host Immune Responses to Surface S-Layer Proteins (SLPs) of Clostridioides difficile

Harish Chandra, Rhett A. Kovall, Jagjit S. Yadav, Xingmin Sun

Microorganisms. 2023 Feb; 11(2): 380. Published online 2023 Feb 2. doi: 10.3390/microorganisms11020380

PMCID:: PMC9963625

Abstract Article PDF–828K

Select item 859575413.

Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile

Mario L. Arrieta-Ortiz, Selva Rupa Christinal Immanuel, Serdar Turkarslan, Wei-Ju Wu, Brintha P. Girinathan, Jay N. Worley, Nicholas DiBenedetto, Olga Soutourina, Johann Peltier, Bruno Dupuy, Lynn Bry, Nitin S. Baliga

Cell Host Microbe. Author manuscript; available in PMC 2022 Nov 10.

Published in final edited form as: Cell Host Microbe. 2021 Nov 10; 29(11): 1709–1723.e5. Published online 2021 Oct 11. doi: 10.1016/j.chom.2021.09.008

PMCID:: PMC8595754

Abstract Article PDF–2.0M

Select item 793812214.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039