Entry - *609427 - LHFPL TETRASPAN SUBFAMILY, MEMBER 5; LHFPL5 - OMIM
 
* 609427

LHFPL TETRASPAN SUBFAMILY, MEMBER 5; LHFPL5


Alternative titles; symbols

LHFP-LIKE PROTEIN 5
TETRASPAN MEMBRANE PROTEIN OF HAIR CELL STEREOCILIA; TMHS


HGNC Approved Gene Symbol: LHFPL5

Cytogenetic location: 6p21.31     Genomic coordinates (GRCh38): 6:35,805,352-35,824,070 (from NCBI)


Gene-Phenotype Relationships
Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
6p21.31 Deafness, autosomal recessive 67 610265 AR 3

TEXT

Cloning and Expression

The spontaneous hurry-scurry (hscy) mutation in mice causes deafness and vestibular dysfunction. Longo-Guess et al. (2005) positionally cloned the gene mutated in hscy mice, Lhfpl5, which they called Tmhs. The deduced 216-amino acid protein contains 4 transmembrane domains. Northern blot analysis of several adult mouse tissues detected Tmhs only in brain. Immunofluorescent localization showed no significant Tmhs in brain sections, but there was intense fluorescence in the inner ear, particularly on stereocilia of both inner and outer hair cells.


Gene Structure

Longo-Guess et al. (2005) determined that the mouse Lhfpl5 gene contains 4 exons and spans 7.9 kb.


Mapping

Longo-Guess et al. (2005) mapped the mouse Lhfpl5 gene to a region of chromosome 17 that shows homology of synteny to human chromosome 6p21.31.


Molecular Genetics

In a Pakistani family with autosomal recessive nonsyndromic hearing loss that mapped to 6p22.3 and was designated DFNB67 (610265), Shabbir et al. (2006) identified a 246delC mutation in the LHFPL5 gene predicted to cause a truncation of the protein at residue 84 (609427.0001). In 2 large Turkish consanguineous families, Kalay et al. (2006) found a homozygous 1-bp deletion (609427.0003) and a missense mutation (609427.0004), respectively, in the LHFPL5 gene. Mutation screening of the homologous LHFPL3 (609719) and LHFPL4 (610240) genes did not reveal any disease-causing mutation. The findings suggested that LHFPL5 is essential for normal function of the human cochlea.


Animal Model

Longo-Guess et al. (2005) stated that the overt phenotype of hscy mice consists of circling behavior, frequent head shaking for side to side, and an inability to swim. Mutant mice also show no response to auditory stimuli. By examining cochlear cross-sections, Longo-Guess et al. (2005) found that hscy mice have severe degeneration of the organ of Corti. They identified a G-to-T transversion at nucleotide 482 of the Tmhs gene, resulting in a cys161-to-phe substitution, as the cause of the hscy phenotype.

Longo-Guess et al. (2005) found that deafness and vestibular function in the 'hurry-scurry' (hscy) mouse is associated with a homozygous cys161-to-phe mutation in the Lhfpl5 gene.


ALLELIC VARIANTS ( 4 Selected Examples):

.0001 DEAFNESS, AUTOSOMAL RECESSIVE 67

LHFPL5, 1-BP DEL, 246C
  
RCV000001762...

In a consanguineous Pakistani family, Shabbir et al. (2006) found that nonsyndromic hearing loss mapping to 6p21.3 (DFNB67; 610265) was associated with a homozygous deletion in the LHFPL5 gene, 246delC, leading to an unchanged pro83 followed by a stop codon (Pro83ProfsTer1). Even if the mRNA was not decayed, the truncated protein would lack 3 of its 4 transmembrane domains and thus would most likely show loss of function.


.0002 DEAFNESS, AUTOSOMAL RECESSIVE 67

LHFPL5, TYR127CYS
  
RCV000001763

In a consanguineous Pakistani family, Shabbir et al. (2006) found that autosomal recessive nonsyndromic hearing loss (DFNB67; 610265) was associated with homozygosity for a missense mutation in the LHFPL5 gene: tyr127 to cys (Y127C).


.0003 DEAFNESS, AUTOSOMAL RECESSIVE 67

LHFPL5, 1-BP DEL, 649G
  
RCV000001764...

In a large Turkish consanguineous family, Kalay et al. (2006) found that autosomal recessive nonsyndromic hearing loss (DFNB67; 610265) was associated with homozygosity for a 1-bp deletion in exon 2 of the LHFPL5 gene: 649delG (Glu216ArgfsTer26). Further screening of index patients from 96 Turkish autosomal recessive nonsyndromic hearing loss families and 90 Dutch patients identified 1 additional Turkish patient carrying the 649delG mutation. Haplotype analysis revealed that the mutation was present on the same haplotype in both families.


.0004 DEAFNESS, AUTOSOMAL RECESSIVE 67

LHFPL5, THR165MET
  
RCV000001765...

In a consanguineous Turkish family, Kalay et al. (2006) found that autosomal recessive nonsyndromic hearing loss (DFNB67; 610265) was associated with a 494C-T transition in exon 2 of the LHFPL5 gene that caused a thr165-to-met substitution (T165M).


REFERENCES

  1. Kalay, E., Li, Y., Uzumcu, A., Uyguner, O., Collin, R. W., Caylan, R., Ulubil-Emiroglu, M., Kersten, F. F. J., Hafiz, G., van Wijk, E., Kayserili, H., Rohmann, E., and 16 others. Mutations in the lipoma HMGIC fusion partner-like 5 (LHFPL5) gene cause autosomal recessive nonsyndromic hearing loss. Hum. Mutat. 27: 633-639, 2006. [PubMed: 16752389, related citations] [Full Text]

  2. Longo-Guess, C. M., Gagnon, L. H., Cook, S. A., Wu, J., Zheng, Q. Y., Johnson, K. R. A missense mutation in the previously undescribed gene Tmhs underlies deafness in hurry-scurry (hscy) mice. Proc. Nat. Acad. Sci. 102: 7894-7899, 2005. [PubMed: 15905332, images, related citations] [Full Text]

  3. Shabbir, M. I., Ahmed, Z. M., Khan, S. Y., Riazuddin, S., Waryah, A. M., Khan, S. N., Camps, R. D., Ghosh, M., Kabra, M., Belyantseva, I. A., Friedman, T. B., Riazuddin, S. Mutations of human TMHS cause recessively inherited nonsyndromic hearing loss. J. Med. Genet. 43: 634-640, 2006. [PubMed: 16459341, images, related citations] [Full Text]


Contributors:
Victor A. McKusick - updated : 7/13/2006
Creation Date:
Patricia A. Hartz : 6/17/2005
carol : 04/05/2021
carol : 11/27/2018
carol : 06/11/2018
carol : 08/25/2006
alopez : 7/19/2006
terry : 7/13/2006
mgross : 6/17/2005

* 609427

LHFPL TETRASPAN SUBFAMILY, MEMBER 5; LHFPL5


Alternative titles; symbols

LHFP-LIKE PROTEIN 5
TETRASPAN MEMBRANE PROTEIN OF HAIR CELL STEREOCILIA; TMHS


HGNC Approved Gene Symbol: LHFPL5

Cytogenetic location: 6p21.31     Genomic coordinates (GRCh38): 6:35,805,352-35,824,070 (from NCBI)


Gene-Phenotype Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
6p21.31 Deafness, autosomal recessive 67 610265 Autosomal recessive 3

TEXT

Cloning and Expression

The spontaneous hurry-scurry (hscy) mutation in mice causes deafness and vestibular dysfunction. Longo-Guess et al. (2005) positionally cloned the gene mutated in hscy mice, Lhfpl5, which they called Tmhs. The deduced 216-amino acid protein contains 4 transmembrane domains. Northern blot analysis of several adult mouse tissues detected Tmhs only in brain. Immunofluorescent localization showed no significant Tmhs in brain sections, but there was intense fluorescence in the inner ear, particularly on stereocilia of both inner and outer hair cells.


Gene Structure

Longo-Guess et al. (2005) determined that the mouse Lhfpl5 gene contains 4 exons and spans 7.9 kb.


Mapping

Longo-Guess et al. (2005) mapped the mouse Lhfpl5 gene to a region of chromosome 17 that shows homology of synteny to human chromosome 6p21.31.


Molecular Genetics

In a Pakistani family with autosomal recessive nonsyndromic hearing loss that mapped to 6p22.3 and was designated DFNB67 (610265), Shabbir et al. (2006) identified a 246delC mutation in the LHFPL5 gene predicted to cause a truncation of the protein at residue 84 (609427.0001). In 2 large Turkish consanguineous families, Kalay et al. (2006) found a homozygous 1-bp deletion (609427.0003) and a missense mutation (609427.0004), respectively, in the LHFPL5 gene. Mutation screening of the homologous LHFPL3 (609719) and LHFPL4 (610240) genes did not reveal any disease-causing mutation. The findings suggested that LHFPL5 is essential for normal function of the human cochlea.


Animal Model

Longo-Guess et al. (2005) stated that the overt phenotype of hscy mice consists of circling behavior, frequent head shaking for side to side, and an inability to swim. Mutant mice also show no response to auditory stimuli. By examining cochlear cross-sections, Longo-Guess et al. (2005) found that hscy mice have severe degeneration of the organ of Corti. They identified a G-to-T transversion at nucleotide 482 of the Tmhs gene, resulting in a cys161-to-phe substitution, as the cause of the hscy phenotype.

Longo-Guess et al. (2005) found that deafness and vestibular function in the 'hurry-scurry' (hscy) mouse is associated with a homozygous cys161-to-phe mutation in the Lhfpl5 gene.


ALLELIC VARIANTS 4 Selected Examples):

.0001   DEAFNESS, AUTOSOMAL RECESSIVE 67

LHFPL5, 1-BP DEL, 246C
SNP: rs779841884, gnomAD: rs779841884, ClinVar: RCV000001762, RCV001291454

In a consanguineous Pakistani family, Shabbir et al. (2006) found that nonsyndromic hearing loss mapping to 6p21.3 (DFNB67; 610265) was associated with a homozygous deletion in the LHFPL5 gene, 246delC, leading to an unchanged pro83 followed by a stop codon (Pro83ProfsTer1). Even if the mRNA was not decayed, the truncated protein would lack 3 of its 4 transmembrane domains and thus would most likely show loss of function.


.0002   DEAFNESS, AUTOSOMAL RECESSIVE 67

LHFPL5, TYR127CYS
SNP: rs104893975, gnomAD: rs104893975, ClinVar: RCV000001763

In a consanguineous Pakistani family, Shabbir et al. (2006) found that autosomal recessive nonsyndromic hearing loss (DFNB67; 610265) was associated with homozygosity for a missense mutation in the LHFPL5 gene: tyr127 to cys (Y127C).


.0003   DEAFNESS, AUTOSOMAL RECESSIVE 67

LHFPL5, 1-BP DEL, 649G
SNP: rs1581972457, ClinVar: RCV000001764, RCV001813935

In a large Turkish consanguineous family, Kalay et al. (2006) found that autosomal recessive nonsyndromic hearing loss (DFNB67; 610265) was associated with homozygosity for a 1-bp deletion in exon 2 of the LHFPL5 gene: 649delG (Glu216ArgfsTer26). Further screening of index patients from 96 Turkish autosomal recessive nonsyndromic hearing loss families and 90 Dutch patients identified 1 additional Turkish patient carrying the 649delG mutation. Haplotype analysis revealed that the mutation was present on the same haplotype in both families.


.0004   DEAFNESS, AUTOSOMAL RECESSIVE 67

LHFPL5, THR165MET
SNP: rs104893976, gnomAD: rs104893976, ClinVar: RCV000001765, RCV003964787

In a consanguineous Turkish family, Kalay et al. (2006) found that autosomal recessive nonsyndromic hearing loss (DFNB67; 610265) was associated with a 494C-T transition in exon 2 of the LHFPL5 gene that caused a thr165-to-met substitution (T165M).


REFERENCES

  1. Kalay, E., Li, Y., Uzumcu, A., Uyguner, O., Collin, R. W., Caylan, R., Ulubil-Emiroglu, M., Kersten, F. F. J., Hafiz, G., van Wijk, E., Kayserili, H., Rohmann, E., and 16 others. Mutations in the lipoma HMGIC fusion partner-like 5 (LHFPL5) gene cause autosomal recessive nonsyndromic hearing loss. Hum. Mutat. 27: 633-639, 2006. [PubMed: 16752389] [Full Text: https://doi.org/10.1002/humu.20368]

  2. Longo-Guess, C. M., Gagnon, L. H., Cook, S. A., Wu, J., Zheng, Q. Y., Johnson, K. R. A missense mutation in the previously undescribed gene Tmhs underlies deafness in hurry-scurry (hscy) mice. Proc. Nat. Acad. Sci. 102: 7894-7899, 2005. [PubMed: 15905332] [Full Text: https://doi.org/10.1073/pnas.0500760102]

  3. Shabbir, M. I., Ahmed, Z. M., Khan, S. Y., Riazuddin, S., Waryah, A. M., Khan, S. N., Camps, R. D., Ghosh, M., Kabra, M., Belyantseva, I. A., Friedman, T. B., Riazuddin, S. Mutations of human TMHS cause recessively inherited nonsyndromic hearing loss. J. Med. Genet. 43: 634-640, 2006. [PubMed: 16459341] [Full Text: https://doi.org/10.1136/jmg.2005.039834]


Contributors:
Victor A. McKusick - updated : 7/13/2006

Creation Date:
Patricia A. Hartz : 6/17/2005

Edit History:
carol : 04/05/2021
carol : 11/27/2018
carol : 06/11/2018
carol : 08/25/2006
alopez : 7/19/2006
terry : 7/13/2006
mgross : 6/17/2005