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Status |
Public on Apr 20, 2010 |
Title |
Genome wide rhythmic transcription under light/dark cycles in Ostreococcus tauri |
Organism |
Ostreococcus tauri |
Experiment type |
Expression profiling by array
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Summary |
Genome wide rhythmic transcription under light/dark cycles is associated with sequential transcription of specific biological processes genes in Ostreococcus tauri. Transcriptional profiling of Ostreococcus tauri under light/dark cycles. In order to identify genes with a diurnal rhythm, cells entrained under 12:12 light/dark cycles were sampled every 3 hours for 27 hours with two overlapping time points at Time 9 (Light ON at Time 9; Light OFF at Time 21) in 3 independent experiments.
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Overall design |
Two-conditions experiment, test situation (kinetic point) vs. Pool of each samples. Biological triplicates: 3 independant kinetics, 9 points per kinetics, Technical triplicates per array.
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Contributor(s) |
Bouget F, Monnier A |
Citation(s) |
20307298, 21352558 |
Submission date |
Jun 03, 2009 |
Last update date |
Mar 09, 2020 |
Contact name |
annabelle monnier |
E-mail(s) |
annabelle.monnier@univ-rennes1.fr
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Phone |
+33 (0)2 23 23 61 14
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Fax |
+33 (0)2 23 23 44 78
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URL |
http://www.umr6061.univ-rennes1.fr
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Organization name |
UMR 6061 Génétique et Développement
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Street address |
2 avenue du Professeur Léon Bernard
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City |
Rennes |
ZIP/Postal code |
35043 |
Country |
France |
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Platforms (1) |
GPL8644 |
Pangenomic Ostreococcus microarray (8K) |
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Samples (27)
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GSM412689 |
Kinetic 1, Time point 9H day 1, technical replicates 1-3 |
GSM412690 |
Kinetic 1, Time point 12H day 1, technical replicates 1-3 |
GSM412691 |
Kinetic 1, Time point 15H day 1, technical replicates 1-3 |
GSM412692 |
Kinetic 1, Time point 18H day 1, technical replicates 1-3 |
GSM412693 |
Kinetic 1, Time point 21H day 1, technical replicates 1-3 |
GSM412694 |
Kinetic 1, Time point 24H day 1, technical replicates 1-3 |
GSM412695 |
Kinetic 1, Time point 3H day 1, technical replicates 1-3 |
GSM412696 |
Kinetic 1, Time point 6H day 1, technical replicates 1-3 |
GSM412697 |
Kinetic 1, Time point 9H day 2, technical replicates 1-3 |
GSM412698 |
Kinetic 2, Time point 9H day 1, technical replicates 1-3 |
GSM412699 |
Kinetic 2, Time point 12H day 1, technical replicates 1-3 |
GSM412700 |
Kinetic 2, Time point 15H day 1, technical replicates 1-3 |
GSM412701 |
Kinetic 2, Time point 18H day 1, technical replicates 1-3 |
GSM412702 |
Kinetic 2, Time point 21H day 1, technical replicates 1-3 |
GSM412703 |
Kinetic 2, Time point 24H day 1, technical replicates 1-3 |
GSM412704 |
Kinetic 2, Time point 3H day 1, technical replicates 1-3 |
GSM412705 |
Kinetic 2, Time point 6H day 1, technical replicates 1-3 |
GSM412706 |
Kinetic 2, Time point 9H day 2, technical replicates 1-3 |
GSM412707 |
Kinetic 3, Time point 9H day 1, technical replicates 1-3 |
GSM412708 |
Kinetic 3, Time point 12H day 1, technical replicates 1-3 |
GSM412709 |
Kinetic 3, Time point 15H day 1, technical replicates 1-3 |
GSM412710 |
Kinetic 3, Time point 18H day 1, technical replicates 1-3 |
GSM412711 |
Kinetic 3, Time point 21H day 1, technical replicates 1-3 |
GSM412712 |
Kinetic 3, Time point 24H day 1, technical replicates 1-3 |
GSM412713 |
Kinetic 3, Time point 3H day 1, technical replicates 1-3 |
GSM412714 |
Kinetic 3, Time point 6H day 1, technical replicates 1-3 |
GSM412715 |
Kinetic 3, Time point 9H day 2, technical replicates 1-3 |
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Relations |
BioProject |
PRJNA116365 |
Supplementary file |
Size |
Download |
File type/resource |
GSE16422_Ostreococcus_data_processed.txt.gz |
1.7 Mb |
(ftp)(http) |
TXT |
GSE16422_RAW.tar |
144.0 Mb |
(http)(custom) |
TAR (of TXT) |
Processed data included within Sample table |
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