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Series GSE16422 Query DataSets for GSE16422
Status Public on Apr 20, 2010
Title Genome wide rhythmic transcription under light/dark cycles in Ostreococcus tauri
Organism Ostreococcus tauri
Experiment type Expression profiling by array
Summary Genome wide rhythmic transcription under light/dark cycles is associated with sequential transcription of specific biological processes genes in Ostreococcus tauri.
Transcriptional profiling of Ostreococcus tauri under light/dark cycles. In order to identify genes with a diurnal rhythm, cells entrained under 12:12 light/dark cycles were sampled every 3 hours for 27 hours with two overlapping time points at Time 9 (Light ON at Time 9; Light OFF at Time 21) in 3 independent experiments.
 
Overall design Two-conditions experiment, test situation (kinetic point) vs. Pool of each samples. Biological triplicates: 3 independant kinetics, 9 points per kinetics, Technical triplicates per array.
 
Contributor(s) Bouget F, Monnier A
Citation(s) 20307298, 21352558
Submission date Jun 03, 2009
Last update date Mar 09, 2020
Contact name annabelle monnier
E-mail(s) annabelle.monnier@univ-rennes1.fr
Phone +33 (0)2 23 23 61 14
Fax +33 (0)2 23 23 44 78
URL http://www.umr6061.univ-rennes1.fr
Organization name UMR 6061 Génétique et Développement
Street address 2 avenue du Professeur Léon Bernard
City Rennes
ZIP/Postal code 35043
Country France
 
Platforms (1)
GPL8644 Pangenomic Ostreococcus microarray (8K)
Samples (27)
GSM412689 Kinetic 1, Time point 9H day 1, technical replicates 1-3
GSM412690 Kinetic 1, Time point 12H day 1, technical replicates 1-3
GSM412691 Kinetic 1, Time point 15H day 1, technical replicates 1-3
Relations
BioProject PRJNA116365

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16422_Ostreococcus_data_processed.txt.gz 1.7 Mb (ftp)(http) TXT
GSE16422_RAW.tar 144.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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