|
| Status |
Public on Nov 23, 2009 |
| Title |
small RNA maize seedling tissues |
| Sample type |
SRA |
| |
|
| Source name |
Total RNA from maize seedling tissues
|
| Organism |
Zea mays |
| Characteristics |
tissue: seedling
strain: B73
|
| Extracted molecule |
total RNA |
| Extraction protocol |
small RNA libraries contructed from root, seedling, tassel, ear, and pollen
|
| |
|
| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Description |
19-24nt RNA gel-extracted from total RNA in seedling tissue
|
| Data processing |
Triimmed: solexa sequences were converted to fasta, the adaptor sequence (CTGTAGGCACCATCAAT) was pattern matched and trimmed off. Only sequences were the adaptor was identified (with at least 6nt) is included in this set
|
| |
|
| Submission date |
Sep 02, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Jer-M Chia |
| E-mail(s) |
chia@cshl.edu
|
| Phone |
(516)367-8810
|
| Fax |
+1-917-319-7573
|
| Organization name |
Cold Spring Harbor Laboratory
|
| Lab |
Ware Lab
|
| Street address |
1, Bungtown Road
|
| City |
Cold Spring Harbor |
| State/province |
NY |
| ZIP/Postal code |
11724 |
| Country |
USA |
| |
|
| Platform ID |
GPL9141 |
| Series (1) |
| GSE17943 |
A Genome-Wide Characterization of MicroRNA Genes in Maize |
|
| Relations |
| SRA |
SRX014795 |
| BioSample |
SAMN00006976 |
