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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 24, 2017 |
| Title |
Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
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| Summary |
Dietary restriction (DR), a reduction in food intake without malnutrition, increases most aspects of health during ageing and extends lifespan in diverse species including rodents and rhesus monkeys. However the mechanisms by which DR interacts with the ageing process to improve health at old age are poorly understood. DNA methylation could play an important role in mediating the effects of DR, because it is sensitive to the effects of nutrition and can affect gene expression memory over time. Here we have profiled genome-wide changes in DNA methylation, gene expression and lipidomics in response to DR and ageing in mouse liver. DR strongly retarded age-related changes in DNA methylation. With ageing, DNA methylation became confined to genic elements and was associated with reduced gene expression, particularly of genes involved in lipid metabolism.
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| Overall design |
Total RNA and whole genome DNA-methylation profiles of liver tissue extracted from 5 months (young) and 26 months (old) dietary-restricted (DR) and control-fed (AL) F1 hybrid mouse strain (C3B6F1) were generated by deep sequencing using Illumina sequencing
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| Contributor(s) |
Oliver H, Sebastian G, Thomas SM, Gabriella F, Oliver H, Felix K, Simon A, Qifeng Z, Michael WJ, Andreas B, Wolf R, Linda P |
| Citation(s) |
28351387 |
| Submission date |
Dec 16, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Oliver Hahn |
| E-mail(s) |
ohahn@calicolabs.com
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| Organization name |
Calico Life Sciences, LLC
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| Lab |
Oliver Hahn
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| Street address |
1170 Veterans Blvd
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| City |
South San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94080 |
| Country |
USA |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (30)
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| Relations |
| BioProject |
PRJNA357680 |
| SRA |
SRP095235 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE92486_Differential_Gene_expression_Analysis_results_ALold-vs-ALyoung.txt.gz |
711.2 Kb |
(ftp)(http) |
TXT |
| GSE92486_Differential_Gene_expression_Analysis_results_DRold-vs-ALold.txt.gz |
716.8 Kb |
(ftp)(http) |
TXT |
| GSE92486_Differential_Gene_expression_Analysis_results_DRold-vs-DRyoung.txt.gz |
708.7 Kb |
(ftp)(http) |
TXT |
| GSE92486_Differential_Gene_expression_Analysis_results_DRyoung-vs-ALyoung.txt.gz |
716.5 Kb |
(ftp)(http) |
TXT |
| GSE92486_RAW.tar |
2.9 Gb |
(http)(custom) |
TAR (of TXT) |
| GSE92486_RNA-seq.Readcount_output.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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