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| Status |
Public on Sep 02, 2015 |
| Title |
Identification of miRNAs and its targets using high-throughput sequencing and degradome analysis in male and female Asparagus officinalis. |
| Organism |
Asparagus officinalis |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
Other
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| Summary |
Two independent small RNA (sRNA) libraries from male and female asparagus plants were sequenced, generating 4.13 and 5.88 million final cleaned reads, respectively. A total of 154 conserved miRNA belonging to 26 families, and 40 novel miRNA candidates that seemed to be specific to asparagus were identified, among them, 63 miRNAs exhibited significant differential expression between male and female plants, and 36 target mRNAs representing 44 conserved and fournovel miRNA in asparagus by high-throughput degradome sequencing analysis.
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| Overall design |
Examination of small RNA in male and female asparagus using high-throughput sequencing
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| Contributor(s) |
Chen J, Qin L |
| Citation(s) |
27068118 |
| Submission date |
Sep 01, 2015 |
| Last update date |
Jul 26, 2019 |
| Contact name |
Li Qin |
| E-mail(s) |
lqin0720@163.com
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| Phone |
18257156702
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| Organization name |
Zhejiang University
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| Department |
Horticulture
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| Lab |
Key Laboratory of Horticultural Plant Growth
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| Street address |
No. 866, Yuhangtang Road
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| City |
Hangzhou |
| State/province |
Zhejiang |
| ZIP/Postal code |
310058 |
| Country |
China |
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| Platforms (1) |
| GPL20875 |
Illumina Genome Analyzer IIx (Asparagus officinalis) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA294446 |
| SRA |
SRP063073 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE72594_miRNAs.xls.gz |
11.4 Kb |
(ftp)(http) |
XLS |
| GSE72594_targets.xls.gz |
36.1 Kb |
(ftp)(http) |
XLS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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