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| Status |
Public on Jan 29, 2016 |
| Title |
Comparative metabolic and transcriptional analysis of a doubled diploid and its diploid citrus rootstock (C. junos cv. Ziyang xiangcheng) suggests its potential value for stress resistance improvement |
| Organism |
Citrus junos |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate global genome expression changes caused by tetraploidization, we compared, by RNA-Seq analysis, the nuclear gene expression profiles of mature leaves of the diploid citrus rootstock and its doubled diploid. A total of 212 genes were differentially expressed between the diploid and doubled dipoid. In biological process category, DEGs were found to be highly related to stress-response functions, such as response to salt stress, to water, and to abscisic acid. In molecular function category, only two terms were overrepresented, namely, inorganic anion transmembrane transporter activity, inorganic phosphate transmembrane transporter activity.
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| Overall design |
Total four sample pools (two independent biological replicates of the diploid and doubled diploid mature leaves)
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| Contributor(s) |
Tan F, Guo W |
| Citation(s) |
25848687 |
| Submission date |
Jan 29, 2015 |
| Last update date |
Jul 31, 2019 |
| Contact name |
Fengquan Tan |
| E-mail(s) |
tanfengquan@webmail.hzau.edu.cn
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| Organization name |
HZAU
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| Street address |
Hongshan
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| City |
Wuhan |
| ZIP/Postal code |
430070 |
| Country |
China |
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| Platforms (1) |
| GPL19717 |
Illumina HiSeq 2500 (Citrus junos) |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA273934 |
| SRA |
SRP052947 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE65416_rpkm.txt.gz |
1.9 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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