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| Status |
Public on Nov 22, 2015 |
| Title |
Transcriptomes of Aspergillus fumigatus Z5 induced by different carbon sources |
| Organism |
Aspergillus fumigatus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Various saprotrophic microorganisms, especially filamentous fungi, can efficiently degrade lignocellulose that is one of the most abundant natural material on earth. It consists of complex carbohydrates and aromatic polymers found in plant cell wall and thus in plant debris. Aspergillus fumigatus Z5 was isolated from compost heaps and showed highly efficient plant biomass-degradation capability.Genome analysis revealed an impressive array of genes encoding cellulases, hemicellulases, and pectinases involved in lignocellulosic biomass degradation. We sequenced the transcriptomes of Aspergillus fumigatus Z5 induced by sucrose, xylan, cellulose and rice straw, respectively. There were 444, 1711 and 1386 significantly differently (q-value ≤ 0.0001 and |log2 of the ratio of the RPM values| ≥ 2) expressed genes in xylan, cellulose and rice straw,respectively, relative to sucrose control.
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| Overall design |
After incubation at 45 ℃, 145rpm for 20 hours with sucrose as the carbon source, mycelia were induced for 16 hours using xylan, cellulose and rice straw, respectively. Transcriptome induced by sucrose was used as the control when comparing the differences between other three transcriptomes (induced by xylan, cellulose and rice straw, respectively).
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| Contributor(s) |
Miao Y, Zhang R |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Feb 17, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
youzhi miao |
| E-mail(s) |
2011203046@njau.edu.cn
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| Organization name |
Nanjing Agricultural University, Nanjing, China
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| Department |
College of Resources & Environmental Science
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| Street address |
No.1 WeiGang, XuanWu, NanJing, JiangSu province, China
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| City |
Nanjing |
| State/province |
JiangSu |
| ZIP/Postal code |
210095 |
| Country |
China |
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| Platforms (1) |
| GPL18295 |
Illumina HiSeq 2000 (Aspergillus fumigatus) |
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| Samples (4)
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| GSM1329298 |
transcriptome data induced by rice straw |
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| Relations |
| BioProject |
PRJNA238506 |
| SRA |
SRP038093 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE55086_all_processed_data.xlsx.gz |
2.4 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Processed data are available on Series record |
| Raw data are available in SRA |
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