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Series GSE52166 Query DataSets for GSE52166
Status Public on Nov 08, 2013
Title Molecular Hallmarks of Naturally Acquired Immunity to Malaria
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Immunity to malaria can be acquired through natural exposure to Plasmodium falciparum (Pf), but only after years of repeated infections. Typically, this immunity is acquired by adolescence and confers protection against disease, but not Pf infection per se. Efforts to understand the mechanisms of this immunity are integral to the development of a vaccine that would mimic the induction of adult immunity in children. The current study applies transcriptomic analyses to a cohort from the rural village of Kalifabougou, Mali, where Pf transmission is intense and seasonal. Signatures that correlate with protection from malaria may yield new hypotheses regarding the biological mechanisms through which malaria immunity is induced by natural Pf infection. The resulting datasets will be of considerable value in the urgent worldwide effort to develop a malaria vaccine that could prevent more than a million deaths annually.
 
Overall design 108 samples; paired pre- and post-challenge for 54 individuals
198 samples; paired pre- and post-challenge for 99 individuals
 
Contributor(s) Kirkness EF, Crompton PD
Citation(s) 27506615
Submission date Nov 07, 2013
Last update date Aug 26, 2019
Contact name Ravi Sanka
E-mail(s) rsanka@jcvi.org
Organization name JCVI
Street address 9704 Medical Center Drive
City Rockville
State/province Maryland
ZIP/Postal code 20850
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (198)
GSM1260479 005a
GSM1260480 005b
GSM1260481 018a
Relations
BioProject PRJNA227074
SRA SRP032775

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52166_RAW.tar 1.5 Gb (http)(custom) TAR (of FPKM_TRACKING, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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