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| Status |
Public on Aug 22, 2013 |
| Title |
Expression data from Serinus canaria HVC, RA and Entopallium |
| Platform organism |
Taeniopygia guttata |
| Sample organisms |
Serinus canaria; Taeniopygia guttata |
| Experiment type |
Expression profiling by array
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| Summary |
Within the overall project, we performed a set of microarrays to validate RNAseq data.
In this data set, we compare the expression data of song nuclei to the optical tectrum dissected from adult canaries housed at long day cycles to identify nuclei specific genes.
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| Overall design |
18 total S. canaria samples housed at long day were analyzed, 6 HVC samples, 5 RA samples and 7 Entopallium samples. The differential expression was analyzed using the group-wise exhaustive analysis with False Discovery Rate set to zero and 10-significant probe minimum coverage, HVc/RA compared to entopallium samples. Additionally, 24 total samples of S. canaria housed at short day were analyzed, 6 HVC samples, 6 HVC samples of canaries treated with Testosterone, 6 Entopallium samples and 6 Entopallium samples treated with Testosterone, and 24 total samples of T. guttata, 6 HVC samples, 6 HVC samples of finches treated with Testosterone, 6 Entopallium samples and 6 Entopallium samples treated with Testosterone, the HVC samples were compared to Entopalliun as described before.
ChipInspector carries out significance analysis on the single probe level. Normalized probe set level data not provided for individual Sample records. Processed data is available on Series record.
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| Contributor(s) |
Frankl-Vilches C, Bakker A, Gahr M |
| Citation(s) |
25631560 |
| Submission date |
Aug 21, 2013 |
| Last update date |
Feb 23, 2015 |
| Contact name |
Carolina Frankl-Vilches |
| E-mail(s) |
frankl@orn.mpg.de
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| Phone |
00498157932402
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| Organization name |
Max Planck Institute for Ornithology
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| Department |
Behavioural Neurobiology
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| Street address |
Eberhard-Gwinner-Str. 6a
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| City |
Seewiesen-Starnberg |
| State/province |
Bavaria |
| ZIP/Postal code |
82319 |
| Country |
Germany |
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| Platforms (1) |
| GPL17605 |
[MPIO-ZF1s520811] Affymetrix Zebra finch Custom Array [transcript version] |
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| Samples (66)
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| GSM1213494 |
HVc, biological rep4 (LD) |
| GSM1213495 |
HVc, biological rep5 (LD) |
| GSM1213496 |
HVc, biological rep6 (LD) |
| GSM1213497 |
RA, biological rep1 (LD) |
| GSM1213498 |
RA, biological rep2 (LD) |
| GSM1213499 |
RA, biological rep3 (LD) |
| GSM1213500 |
RA, biological rep4 (LD) |
| GSM1213501 |
RA, biological rep5 (LD) |
| GSM1213502 |
Entopallium, biological rep1 (LD) |
| GSM1213503 |
Entopallium, biological rep2 (LD) |
| GSM1213504 |
Entopallium, biological rep3 (LD) |
| GSM1213505 |
Entopallium, biological rep4 (LD) |
| GSM1213506 |
Entopallium, biological rep5 (LD) |
| GSM1213507 |
Entopallium, biological rep6 (LD) |
| GSM1213508 |
Entopallium, biological rep7 (LD) |
| GSM1254619 |
HVc, biological rep1 (SD) |
| GSM1254620 |
HVc, biological rep2 (SD) |
| GSM1254621 |
HVc, biological rep3 (SD) |
| GSM1254622 |
HVc, biological rep4 (SD) |
| GSM1254623 |
HVc, biological rep5 (SD) |
| GSM1254624 |
HVc, biological rep6 (SD) |
| GSM1254625 |
Entopallium, biological rep1 (SD) |
| GSM1254626 |
Entopallium, biological rep2 (SD) |
| GSM1254627 |
Entopallium, biological rep3 (SD) |
| GSM1254628 |
Entopallium, biological rep4 (SD) |
| GSM1254629 |
Entopallium, biological rep5 (SD) |
| GSM1254630 |
Entopallium, biological rep6 (SD) |
| GSM1254631 |
HVc_Testo, biological rep1 (SD) |
| GSM1254632 |
HVc_Testo, biological rep2 (SD) |
| GSM1254633 |
HVc_Testo, biological rep3 (SD) |
| GSM1254634 |
HVc_Testo, biological rep4 (SD) |
| GSM1254635 |
HVc_Testo, biological rep5 (SD) |
| GSM1254636 |
HVc_Testo, biological rep6 (SD) |
| GSM1254637 |
Entopallium_Testo, biological rep1 (SD) |
| GSM1254638 |
Entopallium_Testo, biological rep2 (SD) |
| GSM1254639 |
Entopallium_Testo, biological rep3 (SD) |
| GSM1254640 |
Entopallium_Testo, biological rep4 (SD) |
| GSM1254641 |
Entopallium_Testo, biological rep5 (SD) |
| GSM1254642 |
Entopallium_Testo, biological rep6 (SD) |
| GSM1319690 |
Zebra finch, HVc, (LD), biological rep1 |
| GSM1319691 |
Zebra finch, HVc, (LD), biological rep2 |
| GSM1319692 |
Zebra finch, HVc, (LD), biological rep3 |
| GSM1319693 |
Zebra finch, HVc, (LD), biological rep4 |
| GSM1319694 |
Zebra finch, HVc, (LD), biological rep5 |
| GSM1319695 |
Zebra finch, HVc, (LD), biological rep6 |
| GSM1319696 |
Zebra finch, Entopallium, (LD), biological rep1 |
| GSM1319697 |
Zebra finch, Entopallium, (LD), biological rep2 |
| GSM1319698 |
Zebra finch, Entopallium, (LD), biological rep3 |
| GSM1319699 |
Zebra finch, Entopallium, (LD), biological rep4 |
| GSM1319700 |
Zebra finch, Entopallium, (LD), biological rep5 |
| GSM1319701 |
Zebra finch, Entopallium, (LD), biological rep6 |
| GSM1319702 |
Zebra finch, HVc, testosterone, (LD), biological rep1 |
| GSM1319703 |
Zebra finch, HVc, testosterone, (LD), biological rep2 |
| GSM1319704 |
Zebra finch, HVc, testosterone, (LD), biological rep3 |
| GSM1319705 |
Zebra finch, HVc, testosterone, (LD), biological rep4 |
| GSM1319706 |
Zebra finch, HVc, testosterone, (LD), biological rep5 |
| GSM1319707 |
Zebra finch, HVc, testosterone, (LD), biological rep6 |
| GSM1319708 |
Zebra finch, Entopallium, testosterone, (LD), biological rep1 |
| GSM1319709 |
Zebra finch, Entopallium, testosterone, (LD), biological rep2 |
| GSM1319710 |
Zebra finch, Entopallium, testosterone, (LD), biological rep3 |
| GSM1319711 |
Zebra finch, Entopallium, testosterone, (LD), biological rep4 |
| GSM1319712 |
Zebra finch, Entopallium, testosterone, (LD), biological rep5 |
| GSM1319713 |
Zebra finch, Entopallium, testosterone, (LD), biological rep6 |
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| Relations |
| BioProject |
PRJNA215935 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE50070_LDmHVCvsSDmHVC.txt.gz |
775.2 Kb |
(ftp)(http) |
TXT |
| GSE50070_LDmRAvsSDmRA.txt.gz |
209.5 Kb |
(ftp)(http) |
TXT |
| GSE50070_LDm_HVc_to_Ento.txt.gz |
2.3 Mb |
(ftp)(http) |
TXT |
| GSE50070_LDm_RA_to_Ento.txt.gz |
993.5 Kb |
(ftp)(http) |
TXT |
| GSE50070_RAW.tar |
1.8 Gb |
(http)(custom) |
TAR (of CEL) |
| GSE50070_SDmHVc_to_SDmEnto.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE50070_SDmTHVCvsSDmHVC.txt.gz |
853.6 Kb |
(ftp)(http) |
TXT |
| GSE50070_SDmTestoHVc_to_SDmTestoEnto.txt.gz |
813.9 Kb |
(ftp)(http) |
TXT |
| GSE50070_ZF_HVc_to_ento.txt.gz |
427.2 Kb |
(ftp)(http) |
TXT |
| GSE50070_ZF_Testo_HVCvsENTO.txt.gz |
370.5 Kb |
(ftp)(http) |
TXT |
| Processed data are available on Series record |
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