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| Status |
Public on Nov 25, 2013 |
| Title |
Whole transcriptome characterization of the effects of dehydration and rehydration on Cladonia rangiferina, the grey reindeer lichen. |
| Organism |
Cladonia rangiferina |
| Experiment type |
Expression profiling by array
|
| Summary |
We have utilized the raw sequence data from our earlier investigation of the lichen transcriptome to design a custom DNA microarray for C. rangiferina in order to study the transcripts expressed in lichen thallus during dehydration and rehydration. The aim of this study was to identify the genes most differentially expressed during the rehydration and drying processes and also to get a more integrative view of the molecular players who may play roles in the processes required for lichen desiccation tolerance and the rapid re-establishment of photosynthesis through functional annotation.
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| Overall design |
8 samples with three biological replicates for each sample, altogether 24 samples. D1h samples have been drying for 1 hour, D3h samples for 3 hours, D6h samples for 6 hours and Dry samples for 24 hours. W15m samples have been wetted for 15 minutes, W30m samples for 30 minutes, W1h samples for 1 hour and Wet samples for 3 hours.
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| Contributor(s) |
Junttila S, Laiho A, Gyenesei A, Rudd S |
| Citation(s) |
24325588 |
| Submission date |
Jun 04, 2013 |
| Last update date |
Dec 20, 2013 |
| Contact name |
Sini Junttila |
| E-mail(s) |
sini.junttila@vbcf.ac.at
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| Organization name |
University of Turku
|
| Department |
Centre for Biotechnology
|
| Street address |
Tykistökatu 6 A
|
| City |
Turku |
| ZIP/Postal code |
20520 |
| Country |
Finland |
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| Platforms (1) |
| GPL17237 |
Agilent-024164 C. rangiferina array |
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| Samples (24)
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| Relations |
| BioProject |
PRJNA206556 |
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