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| Status |
Public on Mar 07, 2014 |
| Title |
miRNA high-throughput sequencing of follicular thyroid tumors |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We report data obtaibed from high-throughput sequencing of small RNAs in 20 samples of follicular thyroid tumors. We analyzed a total of 4.7±1.5million reads per sample with 3 different pipelines. The main goal was to evaluate the usefulness of next generation sequencing in small RNA profiling and the concordance of its results with microarrays and qPCR. Additionally we verified published follicular thyroid tumor biomarkers in the set of our samples.
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| |
|
| Overall design |
Small RNA expression profiling with High Throughput Sequencing of 20 thyroid tumor samples, performed on an Illumina HiScan-SQ.
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| |
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| Contributor(s) |
Stokowy T, Krohn K |
| Citation(s) |
24625073 |
| Submission date |
Jul 05, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Michal Swierniak |
| Organization name |
University of Warsaw
|
| Department |
Centre of New Technologies
|
| Street address |
Banacha 2C
|
| City |
Warsaw |
| ZIP/Postal code |
02-097 |
| Country |
Poland |
| |
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| Platforms (1) |
| GPL15456 |
Illumina HiScanSQ (Homo sapiens) |
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| Samples (20)
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| Relations |
| BioProject |
PRJNA170031 |
| SRA |
SRP014020 |
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