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Series GSE25406 Query DataSets for GSE25406
Status Public on Jun 18, 2012
Title Comparative analyses of transcriptome during skeletal muscle development between pig breeds differing in muscle growth rate by deep-sequencing
Organism Sus scrofa
Experiment type Expression profiling by high throughput sequencing
Summary Obese and lean pig show breed-specific traits in muscle growth and meat quality. However, the mechanisms underlying remains unclear. Here, we reported the first genome-wide muscle development research from embryonic to 6 months old between Lantang (obese) and Landrace (lean) using Solexa/Illumina’s Genome Analyzer. We obtained 4.22±0.9×107 total reads per sample with approximately 5×106 distinct tags. Filtered adaptor tags, empty reads, low quality tags and tags of copy number =1, we obtained 3.84±0.9×107 clean total tags with 1.5±0.5×106 clean distinct tags.
 
Overall design 20 libraries of longissimus muscle samples were sequenced in Lantang and Landrace at days 35, 49, 63, 77, 91 prenatal and 2, 28, 90, 120, 180 postnatal days.
 
Contributor(s) Zhao X, Mo D, Li A, Gong W, Zhang Y, Xiao S, Chen Y
Citation(s) 21637832, 28566753
Submission date Nov 16, 2010
Last update date Oct 24, 2019
Contact name Jason Karpac
E-mail(s) karpac@tamu.edu
Organization name Texas A&M University Health Sciences Center
Department Molecular and Cellular Medicine
Street address Reynolds Medical Building
City College Station
State/province Texas
ZIP/Postal code 77843
Country USA
 
Platforms (1)
GPL9126 Illumina Genome Analyzer (Sus scrofa)
Samples (20)
GSM623882 longissimus muscle_pooled 3 Landrace 35 day fetals
GSM623883 longissimus muscle_pooled 3 Landrace 49 day fetals
GSM623884 longissimus muscle_pooled 3 Landrace 63 day fetals
Relations
SRA SRP006209
BioProject PRJNA134147

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25406_RAW.tar 19.4 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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