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Status |
Public on Jun 18, 2012 |
Title |
Comparative analyses of transcriptome during skeletal muscle development between pig breeds differing in muscle growth rate by deep-sequencing |
Organism |
Sus scrofa |
Experiment type |
Expression profiling by high throughput sequencing
|
Summary |
Obese and lean pig show breed-specific traits in muscle growth and meat quality. However, the mechanisms underlying remains unclear. Here, we reported the first genome-wide muscle development research from embryonic to 6 months old between Lantang (obese) and Landrace (lean) using Solexa/Illumina’s Genome Analyzer. We obtained 4.22±0.9×107 total reads per sample with approximately 5×106 distinct tags. Filtered adaptor tags, empty reads, low quality tags and tags of copy number =1, we obtained 3.84±0.9×107 clean total tags with 1.5±0.5×106 clean distinct tags.
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Overall design |
20 libraries of longissimus muscle samples were sequenced in Lantang and Landrace at days 35, 49, 63, 77, 91 prenatal and 2, 28, 90, 120, 180 postnatal days.
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Contributor(s) |
Zhao X, Mo D, Li A, Gong W, Zhang Y, Xiao S, Chen Y |
Citation(s) |
21637832, 28566753 |
Submission date |
Nov 16, 2010 |
Last update date |
Oct 24, 2019 |
Contact name |
Jason Karpac |
E-mail(s) |
karpac@tamu.edu
|
Organization name |
Texas A&M University Health Sciences Center
|
Department |
Molecular and Cellular Medicine
|
Street address |
Reynolds Medical Building
|
City |
College Station |
State/province |
Texas |
ZIP/Postal code |
77843 |
Country |
USA |
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Platforms (1) |
GPL9126 |
Illumina Genome Analyzer (Sus scrofa) |
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Samples (20)
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GSM623882 |
longissimus muscle_pooled 3 Landrace 35 day fetals |
GSM623883 |
longissimus muscle_pooled 3 Landrace 49 day fetals |
GSM623884 |
longissimus muscle_pooled 3 Landrace 63 day fetals |
GSM623885 |
longissimus muscle_pooled 3 Landrace 77 day fetals |
GSM623886 |
longissimus muscle_pooled 3 Landrace 91 day fetals |
GSM623887 |
longissimus muscle_pooled 3 Landrace postnatal 2 day pigs |
GSM623888 |
longissimus muscle_pooled 3 Landrace postnatal 28 day pigs |
GSM623889 |
longissimus muscle_pooled 3 Landrace postnatal 90 day pigs |
GSM623890 |
longissimus muscle_pooled 3 Landrace postnatal 120 day pigs |
GSM623891 |
longissimus muscle_pooled 3 Landrace postnatal 180 day pigs |
GSM623892 |
longissimus muscle_pooled 3 Lantang 35 day fetals |
GSM623893 |
longissimus muscle_pooled 3 Lantang 49 day fetals |
GSM623894 |
longissimus muscle_pooled 3 Lantang 63 day fetals |
GSM623895 |
longissimus muscle_pooled 3 Lantang 77 day fetals |
GSM623896 |
longissimus muscle_pooled 3 Lantang 91 day fetals |
GSM623897 |
longissimus muscle_pooled 3 Lantang postnatal 2 day pigs |
GSM623898 |
longissimus muscle_pooled 3 Lantang postnatal 28 day pigs |
GSM623899 |
longissimus muscle_pooled 3 Lantang postnatal 90 day pigs |
GSM623900 |
longissimus muscle_pooled 3 Lantang postnatal 120 day pigs |
GSM623901 |
longissimus muscle_pooled 3 Lantang postnatal 180 day pigs |
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Relations |
SRA |
SRP006209 |
BioProject |
PRJNA134147 |