GEO help: Mouse over screen elements for information.
Status
Public on Apr 06, 2009
Title
CEA Equine / Murine Oligonucleotide Expression Microarray
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Equus caballus
Manufacturer
CEA - DSV/IRCM/LEFG
Manufacture protocol
The equine microarray includes 384 probes and controls of gene transcripts involve din muscle contraction, enegy metabolism and inflammation. The method to design and manufacture the equine microarray was derived from Le Brigand K et all, An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes. Nucleic Acids Res. 2006 Jul 19;34(12). These 384 equine oligonucleotides (50nt) were printed in phosphate buffer with MicroGridII (BioRobotics). They were added to the following mouse oligonucleotide microarray (25K). The mouse oligonucleotide microarray contains 25344 features (probes and controls): 24109 oligonucleotides from mouse RNG/MRC collection (Le Brigand K et all, An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes. Nucleic Acids Res. 20 06 Jul 19;34(12)). Oligos printed in phosphate buffer with MicroGridII (BioRobotics).
Support
glass
Contributor(s)
Maltere P , Robert A , Tendil S , Jeansoule N , Barrey E
Submission date
Mar 26, 2009
Last update date
Apr 06, 2009
Contact name
Olivier ALIBERT
E-mail(s)
olivier.alibert@cea.fr
Organization name
CEA
Department
IRCM
Lab
LEFG
Street address
2 rue Gaston Crémieux
City
Evry
ZIP/Postal code
91057
Country
France
Samples (34)
GSM389689 , GSM389690 , GSM389691 , GSM389692 , GSM389693 , GSM389694
GSM389695 ,
GSM389696 ,
GSM389697 ,
GSM389698 ,
GSM389699 ,
GSM389700 ,
GSM389701 ,
GSM389702 ,
GSM639590 ,
GSM639591 ,
GSM639592 ,
GSM639593 ,
GSM639594 ,
GSM639595 ,
GSM639596 ,
GSM639597 ,
GSM639598 ,
GSM639599 ,
GSM639600 ,
GSM639601 ,
GSM639602 ,
GSM639603 ,
GSM639604 ,
GSM639605 ,
GSM639606 ,
GSM639607 ,
GSM639608 ,
GSM639609
Series (2)
GSE15572
Gene expression profiling in equine polysaccharide storage myopathy
GSE26047
Transcriptome analysis of muscle in horses suffering from recurrent exertional rhabdomyolysis revealed energetic pathway alterations and disruption in the cytoplasmic calcium regulation
Data table header descriptions
ID
TYPE
Probe type
TAX_ID
NCBI Taxonomy Identifier
GB_ACC
GenBank Accession number
UNIGENE
Unigene Identifier
GENE_SYMBOL
Gene symbol
ENTREZGENE_ID
EntrezGene Identifier
SEQUENCE
SPOT_ID
Data table
ID
TYPE
TAX_ID
GB_ACC
UNIGENE
GENE_SYMBOL
ENTREZGENE_ID
SEQUENCE
SPOT_ID
X79547_71_921
oligo
9796
X79547
12S ARNr_RNR1
4549
TGAAAGGAGACAAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGG
12S ARNr_RNR1
X79547_1113_1527
oligo
9796
X79547
16S ARNr_RNR2
4550
TGACATAATCTAAATCTAACTAATTTATAACTTCTACCGCCCTAGAACAG
16S ARNr_RNR2
CX596084_518
oligo
9796
CX596084
Abcb10
23456
AGTTCCCTGATTGTACTGGAAAAAGAAACCACTATTCCATGATAAGCATG
CX603916_532
oligo
9796
CX603916
Eca.5187
ACAA2
100069345
ATCCTTGCCAAATAACCACCACTTATGCCTTAGATAATGATTGCAAGGAA
AF264016_69
oligo
9796
AF264016
ACE
1636
TGCATGCCTACGTCCGCCGCGCACTGCACCGCCGGTACGGGGACAGATAC
DN508641_324
oligo
9796
DN508641
Eca.8590
ACTA2
100062175
CTTTTCCAAACCATTGCTAGCCAAAGCTCTGACTCGTTACCCATGTGTTT
AB178951_1710
oligo
9796
AB178951
Eca.12750
ACTN2
100033870
ATTGCCCGGAGCTCCATCCAGATCACAGGAGCCCTGGAAGACCAGATGAA
CX601061_448
oligo
9796
CX601061
ADRB1
153
CTGGTGATCGTGGCCATCGCCAAAACGCCGCGGCTGCAGACGCTCACCAA
CX597980_423
oligo
9796
CX597980
Eca.4371
AGC1
176
AGCTACAAGCGCAGACTACAGAAGCGGAGCTCCCGGGCCCCACGGAGGAG
CX597394_463
oligo
9796
CX597394
AKT1
207
GTCCAGACGCTGCCCTGCACCATGGCGTTTTTTACATTCAACTTTAGTAT
X79547_5051_15
oligo
9796
X79547
Ala-ARNt_TRNA
4553
CTCTATCTCACATCAATTGAACGCAAATCAAACTCTTTTATTAAGCTAAG
Ala-ARNt_TRNA
CD467807_574
oligo
9796
CD467807
Eca.702
Aldoa
100066121
ACTCCATCACCCTTTCGAGCCCACTGCCAATAAACAACTATTTAAGGGGG
CD536322_519
oligo
9796
CD536322
Eca.13100
ALOX5AP
100034178
CCACCATCTCCCCTCTACTTCTCATTCCCTAACTCTCTGCTGAATACAGG
BM780712_265
oligo
9796
BM780712
Eca.13730
AMBP
100051766
GTCCGGCCCATGTAACCTGGGTTCAAATAAAAACCAAATTGTAGACTCCT
CD467728_513
oligo
9796
CD467728
Eca.14023
ANXA6
100071569
CATACAAAGATGCCTACGAGCGAGACCTGGAGGCTGATGTCATTGGTGAC
X79547_9845_15
oligo
9796
X79547
Arg-ARNt_TRNR
4573
AACCAAAACAAATGATTTCGACTCATTAAACTATGATTAACTTCATAATT
Arg-ARNt_TRNR
X79547_5121_19
oligo
9796
X79547
Asn-ARNt_TRNN
4570
ATCCCACGAAATTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCA
Asn-ARNt_TRNN
X79547_6981_13
oligo
9796
X79547
Asp-ARNt_TRND
4555
AAAATTACATGACTTTGTCAAAGTTAAATTATAGGTTAAACCCCTATATA
Asp-ARNt_TRND
DN511201_499
oligo
9796
DN511201
Eca.6348
ATP1B1
100033968
CCAGGAGTACAGTGCTCTTGTTGATCTTGTATTGAGTCAGGTTAAAACAA
AF489278_81
oligo
9796
AF489278
ATP2A1
487
CCTCACCCCGGAACAAGTTAAGCGGCATCTGGAGAAATACGGCCCCAATG
Total number of rows: 24493 Table truncated, full table size 2642 Kbytes .
Supplementary data files not provided