GEO Browser - GEO

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19 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL13534	Expression profiling by high throughput sequencing			TXT
GSE224850	H1FOO-DD promotes efficiency and uniformity in reprogramming to naive pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	168	BED IDAT MTX TSV TXT	Akira Kunitomi	May 01, 2024
GSE239854	Single nuclei RNA-seq profiles from medulloblastoma tumors with extensive nodularity	Expression profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	55	IDAT TIFF TSV TXT	Konstantin Okonechnikov	Oct 26, 2023
GSE227488	Human CCR6+ Th cells show both an extended stable gradient of Th17 activity and imprinted plasticity	Methylation profiling by genome tiling array Expression profiling by array Expression profiling by high throughput sequencing Other	Homo sapiens unidentified	159	CSV H5 IDAT TXT	Timothy G Myers	Mar 17, 2023
GSE179476	Improved Sendai Viral System for Reprogramming to Naive Pluripotency	Methylation profiling by array Expression profiling by high throughput sequencing	Homo sapiens	26	IDAT TXT	Akira Kunitomi	Dec 15, 2022
GSE124569	Synchrony and asynchrony between an epigenetic clock and developmental timing	Expression profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	81	IDAT TXT	Steve Horvath	Mar 12, 2020
GSE128686	RNA-seq and DNA methylation and hydroxymethylation profiles in sensitive and treatment-resistant cancer cell lines	Expression profiling by high throughput sequencing Methylation profiling by array	Homo sapiens	51	IDAT TXT	Diether Lambrechts	Feb 15, 2020
GSE110821	Developmental origins define epigenomic differences between subcutaneous and visceral adipocytes	Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	48	CSV IDAT TXT	Stephen Bradford	Jul 03, 2019
GSE124811	Epigenetic modulation of β-cells by interferon-α via PNPT11-miR-26a-TET2 triggers autoimmune diabetes	Methylation profiling by genome tiling array Expression profiling by high throughput sequencing	Homo sapiens	12	TXT	Weijia Zhang	Mar 15, 2019
GSE113779	Expression and methylation profiling of esophageal NEC	Methylation profiling by array Non-coding RNA profiling by array Expression profiling by high throughput sequencing	Homo sapiens	6	IDAT TXT	Qian Yang	Apr 28, 2018
GSE92469	Characterizing the epigenome of glioma stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	157	BED BW FPKM_TRACKING IDAT TXT	Keith Robertson	Feb 23, 2018
GSE102996	Combined epigenetic and differentiation-based treatment inhibits neuroblastoma tumor growth and links HIF2α to tumor suppression	Expression profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	90	IDAT TXT	Johan Holmberg	Aug 23, 2017
GSE85688	Cellular model of colon cancer progression reveals signatures of mRNAs, miRNA, lncRNAs and epigenetic modifications associated with metastasis.	Expression profiling by high throughput sequencing Methylation profiling by genome tiling array Non-coding RNA profiling by array	Homo sapiens	18	IDAT TXT	Matjaz Rokavec	Mar 28, 2017
GSE77276	The molecular landscape of hepatocellular carcinoma with portal vein tumor thrombosis	Non-coding RNA profiling by high throughput sequencing Methylation profiling by genome tiling array Genome variation profiling by high throughput sequencing Genome variation profiling by SNP array Expression profiling by high throughput sequencing	Homo sapiens	240	CEL CYCHP IDAT TXT	Jin Gu	Feb 17, 2017
GSE92911	Histone deacetylase inhibition in triple-negative breast cancer	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Expression profiling by high throughput sequencing	Homo sapiens	36	BIGWIG IDAT TXT	Dave S.B. Hoon	Feb 14, 2017
GSE87424	Enhancer Remodeling During Adaptive Bypass to MEK Inhibition Is Attenuated by Pharmacological Targeting of the P-TEFb Complex	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	167	BED CSV IDAT TXT XLSX	Gary L Johnson	Jan 20, 2017
GSE85467	Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by SNP array	Homo sapiens	259	BED BEDGRAPH CEL IDAT TXT	Aditi Qamra	Sep 28, 2016
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by array Genome variation profiling by SNP array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE46073	Gene expression and genome-wide location analysis of breast cancer cell-lines	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	41	BED TXT	Kornelia Polyak	Jun 17, 2014
GSE46220	Inactive or moderately active human promoters are enriched for inter-individual epialleles	Methylation profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	24	TXT	Thomas A Down	Apr 22, 2013