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Source database (GenBank or RefSeq) File type

LepOcu1

Organism name:

Lepisosteus oculatus (spotted gar)

Isolate:

Spotted Gar 1

Sex:

female

BioSample:

SAMN00706774

BioProject:

PRJNA68247

Submitter:

Broad Institute

Date:

2012/01/13

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000242695.1 (latest)

RefSeq assembly accession:

GCF_000242695.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

AHAT01

Assembly method:

AllPaths v. R38293

Genome coverage:

677.5x

Sequencing technology:

Illumina HiSeq

IDs: 327908 [UID] 327908 [GenBank] 885108 [RefSeq]

See Genome Information for Lepisosteus oculatus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000242695.1	≠	GCF_000242695.1	LepOcu1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Allyse Ferrara, Nicholls State University, Thibodaux, LA, and Dr. Chris Amemiya, Benaroya Research Institute at Virginia Mason, Seattle, WA. The sample originated from Bayou Chevreuil in St. ... James Parish  more

Global statistics

Total sequence length	945,878,036
Total ungapped length	869,417,849
Gaps between scaffolds	180
Number of scaffolds	2,106
Scaffold N50	6,928,108
Scaffold L50	45
Number of contigs	45,200
Contig N50	68,337
Contig L50	3,307
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	45,200

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM001404.1	=	NC_023179.1	0
Linkage Group LG2	CM001405.1	=	NC_023180.1	0
Linkage Group LG3	CM001406.1	=	NC_023181.1	0
Linkage Group LG4	CM001407.1	=	NC_023182.1	0
Linkage Group LG5	CM001408.1	=	NC_023183.1	0
Linkage Group LG6	CM001409.1	=	NC_023184.1	0
Linkage Group LG7	CM001410.1	=	NC_023185.1	0
Linkage Group LG8	CM001411.1	=	NC_023186.1	0
Linkage Group LG9	CM001412.1	=	NC_023187.1	0
Linkage Group LG10	CM001413.1	=	NC_023188.1	0
Linkage Group LG11	CM001414.1	=	NC_023189.1	0
Linkage Group LG12	CM001415.1	=	NC_023190.1	0
Linkage Group LG13	CM001416.1	=	NC_023191.1	0
Linkage Group LG14	CM001417.1	=	NC_023192.1	0
Linkage Group LG15	CM001418.1	=	NC_023193.1	0
Linkage Group LG16	CM001419.1	=	NC_023194.1	0
Linkage Group LG17	CM001420.1	=	NC_023195.1	0
Linkage Group LG18	CM001421.1	=	NC_023196.1	0
Linkage Group LG19	CM001422.1	=	NC_023197.1	0
Linkage Group LG20	CM001423.1	=	NC_023198.1	0
Linkage Group LG21	CM001424.1	=	NC_023199.1	0
Linkage Group LG22	CM001425.1	=	NC_023200.1	0
Linkage Group LG23	CM001426.1	=	NC_023201.1	0
Linkage Group LG24	CM001427.1	=	NC_023202.1	0
Linkage Group LG25	CM001428.1	=	NC_023203.1	0
Linkage Group LG26	CM001429.1	=	NC_023204.1	0
Linkage Group LG27	CM001430.1	=	NC_023205.1	0
Linkage Group LG28	CM001431.1	=	NC_023206.1	0
Linkage Group LG29	CM001432.1	=	NC_023207.1	0
unplaced	n/a	n/a	n/a	1,896

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	945,861,706	2,105	869,401,519	6,928,108	43,094	180
Linkage Group LG1	69,065,196	15	64,804,704	9,242,892	3,083	14
Linkage Group LG2	68,575,853	12	64,016,274	8,343,763	3,155	11
Linkage Group LG3	56,798,892	8	54,484,554	8,485,756	1,651	7
Linkage Group LG4	73,198,282	11	67,114,388	7,625,092	3,437	10
Linkage Group LG5	51,417,047	17	48,413,479	6,839,525	2,007	16
Linkage Group LG6	40,768,737	5	38,615,280	10,573,495	1,683	4
Linkage Group LG7	50,812,227	9	47,402,659	7,393,177	1,818	8
Linkage Group LG8	50,348,508	15	47,494,247	4,877,493	2,047	14
Linkage Group LG9	53,241,385	13	50,292,944	9,916,194	2,111	12
Linkage Group LG10	42,345,482	7	40,249,633	21,306,759	1,400	6
Linkage Group LG11	41,528,230	6	40,116,889	6,801,856	1,206	5
Linkage Group LG12	36,423,764	12	33,358,786	6,105,800	1,822	11
Linkage Group LG13	17,115,052	7	16,258,480	8,677,680	659	6
Linkage Group LG14	32,369,425	11	29,499,204	7,855,814	1,285	10
Linkage Group LG15	10,642,048	3	10,158,469	3,042,337	502	2
Linkage Group LG16	21,174,446	4	20,754,133	15,862,163	503	3
Linkage Group LG17	32,595,267	7	30,454,600	5,998,006	1,204	6
Linkage Group LG18	15,682,605	5	15,131,986	4,670,070	476	4
Linkage Group LG19	9,910,484	2	9,175,499	9,895,815	614	1
Linkage Group LG20	14,739,584	4	13,803,781	10,831,814	646	3
Linkage Group LG21	15,143,781	4	14,348,060	4,281,797	710	3
Linkage Group LG22	11,620,783	2	11,021,183	10,781,614	553	1
Linkage Group LG23	17,039,836	3	16,669,607	9,863,157	411	2
Linkage Group LG24	9,492,101	3	7,542,898	6,160,119	1,329	2
Linkage Group LG25	14,387,843	4	13,603,158	10,030,049	642	3
Linkage Group LG26	13,772,684	6	12,512,375	4,693,135	817	5
Linkage Group LG27	15,260,519	6	14,624,148	10,516,468	529	5
Linkage Group LG28	5,380,255	5	2,873,338	1,702,756	1,086	4
Linkage Group LG29	293,761	3	128,242	211,989	51	2
unplaced	54,717,629	1,896	34,478,521	239,493	5,657	0

Assembly

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LepOcu1

See Genome Information for Lepisosteus oculatus

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear