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    LOC6629598 RB1-inducible coiled-coil protein 1 [ Drosophila virilis ]

    Gene ID: 6629598, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6629598
    Gene description
    RB1-inducible coiled-coil protein 1
    Locus tag
    Dvir_GJ23957
    See related
    EnsemblRapid:LOC6629598
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila virilis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
    Also known as
    GJ23957; GJ23957-PB; GJ23957-PC; GJ23957-PD; GJ23957-PE; GJ23957-PF; GJ23957-PG; GJ23957-PH
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6629598 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587377.1 (4640736..4650302)

    NW_022587377.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 33 Neighboring gene A-kinase anchor protein 17A Neighboring gene RAS oncogene family member Rab23 Neighboring gene PTB_TBC1D1_like and TBC domain-containing protein plx

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022587377 Unplaced Scaffold Reference DvirRS2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables molecular adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in piecemeal microautophagy of the nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reticulophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg1/ULK1 kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RB1-inducible coiled-coil protein 1
    Names
    Dvir\GJ23957
    Dvir\GJ23957-PB
    Dvir\GJ23957-PC
    Dvir\GJ23957-PD
    Dvir\GJ23957-PE
    Dvir\GJ23957-PF
    Dvir\GJ23957-PG
    Dvir\GJ23957-PH
    dvir_GLEANR_9274

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DvirRS2

    Genomic

    1. NW_022587377.1 Reference DvirRS2

      Range
      4640736..4650302
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015171997.2 → XP_015027483.1  RB1-inducible coiled-coil protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A0Q9WFT5
      Related
      XP_015027483.1, XM_015171997.2
      Conserved Domains (1) summary
      pfam10377
      Location:929 → 1085
      ATG11; Autophagy-related protein 11

    2. XM_015171996.2 → XP_015027482.1  RB1-inducible coiled-coil protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A0Q9WPY3
      Related
      XP_015027482.1, XM_015171996.2
      Conserved Domains (1) summary
      pfam10377
      Location:929 → 1085
      ATG11; Autophagy-related protein 11

    3. XM_015171995.2 → XP_015027481.1  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      B4LZ64
      Related
      XP_015027481.1, XM_015171995.2
      Conserved Domains (1) summary
      pfam10377
      Location:929 → 1085
      ATG11; Autophagy-related protein 11

    4. XM_032437313.1 → XP_032293204.1  RB1-inducible coiled-coil protein 1 isoform X2

      Related
      XP_032293204.1, XM_032437313.1
      Conserved Domains (4) summary
      COG1196
      Location:794 → 942
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02169
      Location:662 → 923
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd17060
      Location:2 → 74
      Ubl_RB1CC1; ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins
      pfam10377
      Location:929 → 1085
      ATG11; Autophagy-related protein 11

    5. XM_015171994.2 → XP_015027480.1  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      B4LZ64
      Related
      XP_015027480.1, XM_015171994.2
      Conserved Domains (1) summary
      pfam10377
      Location:929 → 1085
      ATG11; Autophagy-related protein 11

    6. XM_015171999.2 → XP_015027485.1  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      B4LZ64
      Related
      XP_015027485.1, XM_015171999.2
      Conserved Domains (1) summary
      pfam10377
      Location:929 → 1085
      ATG11; Autophagy-related protein 11

    7. XM_002053515.3 → XP_002053551.2  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      B4LZ64
      Related
      XP_002053551.2, XM_002053515.3
      Conserved Domains (1) summary
      pfam10377
      Location:929 → 1085
      ATG11; Autophagy-related protein 11

    8. XM_015171998.2 → XP_015027484.1  RB1-inducible coiled-coil protein 1 isoform X1

      UniProtKB/TrEMBL
      B4LZ64
      Related
      XP_015027484.1, XM_015171998.2
      Conserved Domains (1) summary
      pfam10377
      Location:929 → 1085
      ATG11; Autophagy-related protein 11
    Nucleotide Protein Strain
    Heading Accession and Version

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