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    LOC105146185 protein smoothened [ Acromyrmex echinatior (Panamanian leafcutter ant) ]

    Gene ID: 105146185, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC105146185
    Gene description
    protein smoothened
    Locus tag
    G5I_06159
    See related
    EnsemblRapid:LOC105146185
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acromyrmex echinatior
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Acromyrmex
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC105146185 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Aech_3.9 (GCF_000204515.1) Unplaced Scaffold NW_011627117.1 (95655..100378)

    NW_011627117.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 3 Neighboring gene ankyrin repeat domain-containing protein 54 Neighboring gene androgen-induced gene 1 protein-like Neighboring gene clavesin-1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011627117.1 Unplaced Scaffold Reference Aech_3.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables patched binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in commissural neuron axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of smoothened signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in smoothened signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein smoothened

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acromyrmex echinatior Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aech_3.9

    Genomic

    1. NW_011627117.1 Reference Aech_3.9

      Range
      95655..100378
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011056281.1 → XP_011054583.1  protein smoothened isoform X1

      Related
      XP_011054583.1, XM_011056281.1
      Conserved Domains (3) summary
      cd07451
      Location:68 → 199
      CRD_SMO; Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein
      pfam01534
      Location:224 → 546
      Frizzled; Frizzled/Smoothened family membrane region
      pfam07094
      Location:797 → 874
      DUF1357; Protein of unknown function (DUF1357)

    2. XM_011056282.1 → XP_011054584.1  protein smoothened isoform X2

      See identical proteins and their annotated locations for XP_011054584.1

      UniProtKB/TrEMBL
      F4WKG2
      Related
      XP_011054584.1, XM_011056282.1
      Conserved Domains (3) summary
      cd07451
      Location:68 → 199
      CRD_SMO; Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein
      pfam01534
      Location:224 → 546
      Frizzled; Frizzled/Smoothened family membrane region
      pfam07094
      Location:789 → 866
      DUF1357; Protein of unknown function (DUF1357)
    Nucleotide Protein
    Heading Accession and Version

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