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    ATG9A autophagy related 9A [ Bos taurus (cattle) ]

    Gene ID: 540482, updated on 4-Apr-2024

    Summary

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    Official Symbol
    ATG9Aprovided by VGNC
    Official Full Name
    autophagy related 9Aprovided by VGNC
    Primary source
    VGNC:VGNC:26262
    See related
    BGD:BT13106; Ensembl:ENSBTAG00000020608
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    ATG9
    Orthologs
    human mouse all
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    Genomic context

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    See ATG9A in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (107170285..107179723, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1-type containing 2B Neighboring gene ATP binding cassette subfamily B member 6 Neighboring gene ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 Neighboring gene galactosidase beta 1 like Neighboring gene serine/threonine kinase 16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autophagosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy-related protein 9A
    Names
    APG9-like 1
    ATG9 autophagy related 9 homolog A
    autophagy protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034706.2 → NP_001029878.1  autophagy-related protein 9A

      See identical proteins and their annotated locations for NP_001029878.1

      Status: PROVISIONAL

      Source sequence(s)
      BC140511
      UniProtKB/Swiss-Prot
      A5D7D0, Q3T904
      Conserved Domains (1) summary
      pfam04109
      Location:179 → 528
      APG9; Autophagy protein Apg9

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      107170285..107179723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010802366.4 → XP_010800668.1  autophagy-related protein 9A isoform X1

      See identical proteins and their annotated locations for XP_010800668.1

      UniProtKB/Swiss-Prot
      A5D7D0, Q3T904
      Conserved Domains (1) summary
      pfam04109
      Location:179 → 528
      APG9; Autophagy protein Apg9

    2. XM_005202865.5 → XP_005202922.1  autophagy-related protein 9A isoform X1

      See identical proteins and their annotated locations for XP_005202922.1

      UniProtKB/Swiss-Prot
      A5D7D0, Q3T904
      Conserved Domains (1) summary
      pfam04109
      Location:179 → 528
      APG9; Autophagy protein Apg9

    3. XM_024977137.2 → XP_024832905.1  autophagy-related protein 9A isoform X2

      Related
      ENSBTAP00000027461.5, ENSBTAT00000027461.6
      Conserved Domains (1) summary
      pfam04109
      Location:161 → 510
      APG9; Autophagy protein Apg9

    4. XM_015459234.2 → XP_015314720.1  autophagy-related protein 9A isoform X1

      UniProtKB/Swiss-Prot
      A5D7D0, Q3T904
      Conserved Domains (1) summary
      pfam04109
      Location:179 → 528
      APG9; Autophagy protein Apg9

    5. XM_005202866.4 → XP_005202923.1  autophagy-related protein 9A isoform X1

      See identical proteins and their annotated locations for XP_005202923.1

      UniProtKB/Swiss-Prot
      A5D7D0, Q3T904
      Conserved Domains (1) summary
      pfam04109
      Location:179 → 528
      APG9; Autophagy protein Apg9

    6. XM_005202864.4 → XP_005202921.1  autophagy-related protein 9A isoform X1

      See identical proteins and their annotated locations for XP_005202921.1

      UniProtKB/Swiss-Prot
      A5D7D0, Q3T904
      Conserved Domains (1) summary
      pfam04109
      Location:179 → 528
      APG9; Autophagy protein Apg9

    7. XM_010802365.3 → XP_010800667.1  autophagy-related protein 9A isoform X1

      See identical proteins and their annotated locations for XP_010800667.1

      UniProtKB/Swiss-Prot
      A5D7D0, Q3T904
      Conserved Domains (1) summary
      pfam04109
      Location:179 → 528
      APG9; Autophagy protein Apg9

    8. XM_010802364.4 → XP_010800666.1  autophagy-related protein 9A isoform X1

      See identical proteins and their annotated locations for XP_010800666.1

      UniProtKB/Swiss-Prot
      A5D7D0, Q3T904
      Conserved Domains (1) summary
      pfam04109
      Location:179 → 528
      APG9; Autophagy protein Apg9

    9. XM_010802369.4 → XP_010800671.1  autophagy-related protein 9A isoform X3

      Conserved Domains (1) summary
      pfam04109
      Location:83 → 432
      APG9; Autophagy protein Apg9
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3T904.1 GenPept UniProtKB/Swiss-Prot:Q3T904

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