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    commd5 COMM domain containing 5 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 588044, updated on 14-Dec-2023

    Summary

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    Symbol
    commd5
    Full Name
    COMM domain containing 5
    Primary source
    EchinoBase:ECB-GENE-23046031
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See commd5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145596.1 (15190108..15194796, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577405.1 (46897..51771)

    NW_022145596.1Genomic Context describing neighboring genes Neighboring gene monocarboxylate transporter 9 Neighboring gene coiled-coil domain containing 134 Neighboring gene coronin 7 Neighboring gene pre-mRNA 3'-end-processing factor FIP1-like Neighboring gene cleavage and polyadenylation specificity factor subunit 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COMM domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145596.1 Reference Spur_5.0 Primary Assembly

      Range
      15190108..15194796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_787745.5 → XP_792838.1  COMM domain-containing protein 5

      UniProtKB/TrEMBL
      A0A7M7RI06
      Conserved Domains (1) summary
      cd04753
      Location:111 → 220
      Commd5_HCaRG; COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene). HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal ...
    Nucleotide Protein
    Heading Accession and Version

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