U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    MMP-1 metalloendoproteinase 1-like [ Cucumis sativus (cucumber) ]

    Gene ID: 101206689, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    MMP-1
    Gene description
    metalloendoproteinase 1-like
    Locus tag
    Csa_009090
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 5 NC_026659.2 (29747849..29749013, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 5 NC_026659.1 (25870100..25871264, complement)

    Chromosome 5 - NC_026659.2Genomic Context describing neighboring genes Neighboring gene metalloendoproteinase 2-MMP Neighboring gene metalloendoproteinase 4-MMP Neighboring gene metalloendoproteinase 2-MMP Neighboring gene metalloendoproteinase 2-MMP

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A matrix metalloproteinase gene is expressed at the boundary of senescence and programmed cell death in cucumber. Delorme VG, et al. Plant Physiol, 2000 Jul. PMID 10889240, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    metalloendoproteinase 1-like
    Names
    matrix metalloproteinase
    senescence-specific protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001280751.1 → NP_001267680.1  metalloendoproteinase 1-like precursor

      See identical proteins and their annotated locations for NP_001267680.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ133371
      UniProtKB/TrEMBL
      Q9LEL9
      Conserved Domains (2) summary
      cd04278
      Location:168 → 318
      ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
      pfam01471
      Location:59 → 123
      PG_binding_1; Putative peptidoglycan binding domain

    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026659.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      29747849..29749013 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.