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    LOC109909596 C-C motif chemokine 20 [ Oncorhynchus kisutch (coho salmon) ]

    Gene ID: 109909596, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC109909596
    Gene description
    C-C motif chemokine 20
    See related
    Ensembl:ENSOKIG00005014874
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus kisutch
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC109909596 in Genome Data Viewer
    Location:
    chromosome: LG18
    Exon count:
    4
    Annotation release Status Assembly LG Location
    101 current Okis_V2 (GCF_002021735.2) LG18 NC_034191.2 (68801532..68802796, complement)
    100 previous assembly Okis_V1 (GCF_002021735.1) LG18 NC_034191.1 (11327815..11329077)

    Linkage Group LG18 - NC_034191.2Genomic Context describing neighboring genes Neighboring gene activated CDC42 kinase 1-like Neighboring gene transferrin receptor protein 1-like Neighboring gene mitogen-activated protein kinase kinase kinase 15 Neighboring gene SH3-domain kinase binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CCR chemokine receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chemokine activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to interleukin-1 IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to tumor necrosis factor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to type II interferon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lymphocyte chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monocyte chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neutrophil chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of ERK1 and ERK2 cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-C motif chemokine 20
    Names
    chemokine CK-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Okis_V2 Primary Assembly

    Genomic

    1. NC_034191.2 Reference Okis_V2 Primary Assembly

      Range
      68801532..68802796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020508624.2 → XP_020364213.1  C-C motif chemokine 20

      UniProtKB/TrEMBL
      Q9PTS4
      Related
      ENSOKIP00005034779.1, ENSOKIT00005036692.1
      Conserved Domains (1) summary
      cd01119
      Location:27 → 87
      Chemokine_CC_DCCL; subgroup of the Chemokine_CC subgroup based on the presence of a DCCL motif involving the two N-terminal cysteine residues; includes a number of small inducible cytokines capable of reversibly inhibiting normal hematopoietic progenitor proliferation by ...
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases