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    mybH SWIRM domain-containing protein [ Dictyostelium discoideum AX4 ]

    Gene ID: 8621224, updated on 17-May-2024

    Summary

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    Gene symbol
    mybH
    Gene description
    SWIRM domain-containing protein
    Primary source
    dictyBase:DDB_G0277927
    Locus tag
    DDB_G0277927
    See related
    AmoebaDB:DDB_G0277927; VEuPathDB:DDB_G0277927
    Gene type
    protein coding
    RNA name
    myb domain-containing protein
    RefSeq status
    PROVISIONAL
    Organism
    Dictyostelium discoideum AX4 (strain: AX4)
    Lineage
    Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
    Old locus tag
    DDBDRAFT_0204301; DDBDRAFT_0220617; DDB_0204301; DDB_0220617
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_007089.4 (16340..20087, complement)

    Chromosome 3 - NC_007089.4Genomic Context describing neighboring genes Neighboring gene DNA helicase Neighboring gene hypothetical protein Neighboring gene helicase superfamily 1 and 2 domain-containing protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007089.4

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of Dictyostelium prestalk-specific gene expression by a SHAQKY family MYB transcription factor. Fukuzawa M, et al. Development, 2006 May. PMID 16571632
    2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by dictyBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Names
    SWIRM domain-containing protein
    myb domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_007089.4 Reference assembly

      Range
      16340..20087 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_636918.1 → XP_642011.1  myb domain-containing protein [Dictyostelium discoideum AX4]

      See identical proteins and their annotated locations for XP_642011.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q54Z40
      Conserved Domains (4) summary
      cd08067
      Location:772 → 962
      MPN_2A_DUB; Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase
      smart00717
      Location:230 → 277
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:231 → 270
      Myb_DNA-binding; Myb-like DNA-binding domain
      pfam04433
      Location:528 → 615
      SWIRM; SWIRM domain
    Nucleotide Protein
    Heading Accession and Version

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