U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    TRPC5 transient receptor potential cation channel subfamily C member 5 [ Elephantulus edwardii (Cape elephant shrew) ]

    Gene ID: 102876744, updated on 10-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    TRPC5
    Gene description
    transient receptor potential cation channel subfamily C member 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Elephantulus edwardii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Macroscelidea; Macroscelididae; Elephantulus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TRPC5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current EleEdw1.0 (GCF_000299155.1) Unplaced Scaffold NW_006399833.1 (11203384..11466706, complement)

    NW_006399833.1Genomic Context describing neighboring genes Neighboring gene SUB1 homolog (S. cerevisiae) pseudogene Neighboring gene ALG13 UDP-N-acetylglucosaminyltransferase subunit Neighboring gene G2/mitotic-specific cyclin-B2-like Neighboring gene uncharacterized LOC102849360 Neighboring gene profilin-1-like Neighboring gene high mobility group protein B3-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_006399833 unplaced scaffold reference EleEdw1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol 1,4,5 trisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables store-operated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in manganese ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cation channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    short transient receptor potential channel 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Elephantulus edwardii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EleEdw1.0

    Genomic

    1. NW_006399833.1 Reference EleEdw1.0

      Range
      11203384..11466706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006889931.1 → XP_006889993.1  short transient receptor potential channel 5

      Conserved Domains (4) summary
      cd00204
      Location:39 → 162
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:17 → 756
      trp; transient-receptor-potential calcium channel protein
      pfam08344
      Location:176 → 235
      TRP_2; Transient receptor ion channel II
      sd00045
      Location:35 → 67
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.