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    ARFIP1 ADP ribosylation factor interacting protein 1 [ Columba livia (rock pigeon) ]

    Gene ID: 102098697, updated on 14-May-2024

    Summary

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    Gene symbol
    ARFIP1
    Gene description
    ADP ribosylation factor interacting protein 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Columba livia
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba
    Also known as
    Arfaptin-1
    Orthologs
    human mouse all
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    Genomic context

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    See ARFIP1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 4 NC_088605.1 (46612429..46657947, complement)
    102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973242.1 (868389..913881)

    Chromosome 4 - NC_088605.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110357631 Neighboring gene FH2 domain containing 1 Neighboring gene uncharacterized LOC135579447 Neighboring gene tigger transposable element derived 4 Neighboring gene transmembrane protein 154

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in trans-Golgi network membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arfaptin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bColLiv1.pat.W.v2

    Genomic

    1. NC_088605.1 Reference bColLiv1.pat.W.v2

      Range
      46612429..46657947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_065062733.1 → XP_064918805.1  arfaptin-1 isoform X18

    2. XM_005500834.4 → XP_005500891.1  arfaptin-1 isoform X9

      UniProtKB/TrEMBL
      A0A2I0LXR0
      Conserved Domains (1) summary
      cd07660
      Location:177 → 377
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    3. XM_021285375.2 → XP_021141050.1  arfaptin-1 isoform X13

      Conserved Domains (1) summary
      cd07660
      Location:153 → 353
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    4. XM_065062731.1 → XP_064918803.1  arfaptin-1 isoform X17

    5. XM_005500832.3 → XP_005500889.1  arfaptin-1 isoform X5

      UniProtKB/TrEMBL
      A0A2I0LXQ2
      Conserved Domains (1) summary
      cd07660
      Location:185 → 385
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    6. XM_021285372.2 → XP_021141047.1  arfaptin-1 isoform X10

      Conserved Domains (1) summary
      cd07660
      Location:175 → 375
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    7. XM_021285376.2 → XP_021141051.1  arfaptin-1 isoform X14

      Conserved Domains (1) summary
      cd07660
      Location:151 → 351
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    8. XM_005500833.4 → XP_005500890.1  arfaptin-1 isoform X7

      UniProtKB/TrEMBL
      A0A2I0LXQ1
      Conserved Domains (1) summary
      cd07660
      Location:183 → 383
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    9. XM_065062723.1 → XP_064918795.1  arfaptin-1 isoform X8

    10. XM_065062721.1 → XP_064918793.1  arfaptin-1 isoform X4

    11. XM_065062719.1 → XP_064918791.1  arfaptin-1 isoform X2

    12. XM_065062722.1 → XP_064918794.1  arfaptin-1 isoform X6

    13. XM_065062720.1 → XP_064918792.1  arfaptin-1 isoform X3

    14. XM_065062718.1 → XP_064918790.1  arfaptin-1 isoform X1

    15. XM_021285373.2 → XP_021141048.1  arfaptin-1 isoform X11

      Conserved Domains (1) summary
      cd07660
      Location:156 → 356
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    16. XM_065062728.1 → XP_064918800.1  arfaptin-1 isoform X15

    17. XM_065062729.1 → XP_064918801.1  arfaptin-1 isoform X16

    18. XM_065062726.1 → XP_064918798.1  arfaptin-1 isoform X12

    19. XM_065062732.1 → XP_064918804.1  arfaptin-1 isoform X18

    20. XM_065062730.1 → XP_064918802.1  arfaptin-1 isoform X17

    21. XM_065062727.1 → XP_064918799.1  arfaptin-1 isoform X15

    22. XM_065062724.1 → XP_064918796.1  arfaptin-1 isoform X11

    23. XM_065062725.1 → XP_064918797.1  arfaptin-1 isoform X11

    Nucleotide Protein
    Heading Accession and Version

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