ssbp4 single stranded DNA binding protein 4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ssbp4provided by ZNC
Official Full Name: single stranded DNA binding protein 4provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-469
See related: Ensembl:ENSDARG00000056483 AllianceGenome:ZFIN:ZDB-GENE-030131-469
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ssbp; wu:fb33f07; si:ch211-202n20.1
Summary: Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP4 (single stranded DNA binding protein 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 22

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (20954459..21046694, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (20929481..21021716, complement)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb01b12.y1 (e-PCR)
- UniSTS:189778

fb33f07 (e-PCR)
- UniSTS:189024

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables single-stranded DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in positive regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: single-stranded DNA-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001202512.2 → NP_001189441.1 single-stranded DNA-binding protein 4

Status: VALIDATED

Source sequence(s)

AL773593, CT025756

UniProtKB/TrEMBL

A0A8M1NYZ2, F1QSI6

Related

ENSDARP00000064901.6, ENSDART00000064902.8

Conserved Domains (2) summary

smart00667
Location:17 → 43

LisH; Lissencephaly type-1-like homology motif

pfam04503
Location:81 → 363

SSDP; Single-stranded DNA binding protein, SSDP