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    nfatc4 nuclear factor of activated T cells 4 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100489466, updated on 25-Apr-2024

    Summary

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    Official Symbol
    nfatc4provided by Xenbase
    Official Full Name
    nuclear factor of activated T cells 4provided by Xenbase
    Primary source
    Xenbase:XB-GENE-876539
    See related
    Ensembl:ENSXETG00000016887
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    nfat3; nf-at3; nf-atc4
    Orthologs
    human mouse all
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    Genomic context

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    See nfatc4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (142542101..142580008)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (130090043..130128246)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene leukotriene B4 receptor 2 Neighboring gene leukotriene B4 receptor Neighboring gene receptor interacting serine/threonine kinase 3 Neighboring gene adenylate cyclase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor of activated T-cells, cytoplasmic 4
    Names
    nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      142542101..142580008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002934323.5 → XP_002934369.1  nuclear factor of activated T-cells, cytoplasmic 4

      UniProtKB/TrEMBL
      F6U5L6
      Related
      ENSXETP00000036791.4, ENSXETT00000036791.5
      Conserved Domains (3) summary
      PHA03247
      Location:771 → 969
      PHA03247; large tegument protein UL36; Provisional
      cl08275
      Location:405 → 578
      RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)
      cl15674
      Location:583 → 683
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    Nucleotide Protein Strain
    Heading Accession and Version

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