U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    APAF1 apoptotic peptidase activating factor 1 [ Crotalus tigris (Tiger rattlesnake) ]

    Gene ID: 120312825, updated on 21-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    APAF1
    Gene description
    apoptotic peptidase activating factor 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Crotalus tigris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See APAF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024097071.1 (444798..505707)

    NW_024097071.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA53 Neighboring gene solute carrier family 25 member 3 Neighboring gene IKBKB interacting protein Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1B Neighboring gene bridge-like lipid transfer protein family member 3B

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_024097071 Unplaced Scaffold Reference ASM1654583v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in apoptotic signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of apoptosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    apoptotic protease-activating factor 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1654583v1

    Genomic

    1. NW_024097071.1 Reference ASM1654583v1

      Range
      444798..505707
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039354047.1 → XP_039209981.1  apoptotic protease-activating factor 1

      Conserved Domains (5) summary
      cd00200
      Location:614 → 906
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:623 → 655
      7WD40; WD40 repeat [structural motif]
      pfam00931
      Location:144 → 374
      NB-ARC; NB-ARC domain
      pfam17908
      Location:453 → 587
      APAF1_C; APAF-1 helical domain
      cl14633
      Location:7 → 91
      DD; Death Domain Superfamily of protein-protein interaction domains

    2. XM_039354044.1 → XP_039209978.1  apoptotic protease-activating factor 1

      Conserved Domains (5) summary
      cd00200
      Location:614 → 906
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:623 → 655
      7WD40; WD40 repeat [structural motif]
      pfam00931
      Location:144 → 374
      NB-ARC; NB-ARC domain
      pfam17908
      Location:453 → 587
      APAF1_C; APAF-1 helical domain
      cl14633
      Location:7 → 91
      DD; Death Domain Superfamily of protein-protein interaction domains

    3. XM_039354042.1 → XP_039209976.1  apoptotic protease-activating factor 1

      Conserved Domains (5) summary
      cd00200
      Location:614 → 906
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:623 → 655
      7WD40; WD40 repeat [structural motif]
      pfam00931
      Location:144 → 374
      NB-ARC; NB-ARC domain
      pfam17908
      Location:453 → 587
      APAF1_C; APAF-1 helical domain
      cl14633
      Location:7 → 91
      DD; Death Domain Superfamily of protein-protein interaction domains

    4. XM_039354041.1 → XP_039209975.1  apoptotic protease-activating factor 1

      Conserved Domains (5) summary
      cd00200
      Location:614 → 906
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:623 → 655
      7WD40; WD40 repeat [structural motif]
      pfam00931
      Location:144 → 374
      NB-ARC; NB-ARC domain
      pfam17908
      Location:453 → 587
      APAF1_C; APAF-1 helical domain
      cl14633
      Location:7 → 91
      DD; Death Domain Superfamily of protein-protein interaction domains

    5. XM_039354040.1 → XP_039209974.1  apoptotic protease-activating factor 1

      Conserved Domains (5) summary
      cd00200
      Location:614 → 906
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:623 → 655
      7WD40; WD40 repeat [structural motif]
      pfam00931
      Location:144 → 374
      NB-ARC; NB-ARC domain
      pfam17908
      Location:453 → 587
      APAF1_C; APAF-1 helical domain
      cl14633
      Location:7 → 91
      DD; Death Domain Superfamily of protein-protein interaction domains

    6. XM_039354043.1 → XP_039209977.1  apoptotic protease-activating factor 1

      Conserved Domains (5) summary
      cd00200
      Location:614 → 906
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:623 → 655
      7WD40; WD40 repeat [structural motif]
      pfam00931
      Location:144 → 374
      NB-ARC; NB-ARC domain
      pfam17908
      Location:453 → 587
      APAF1_C; APAF-1 helical domain
      cl14633
      Location:7 → 91
      DD; Death Domain Superfamily of protein-protein interaction domains

    7. XM_039354045.1 → XP_039209979.1  apoptotic protease-activating factor 1

      Conserved Domains (5) summary
      cd00200
      Location:614 → 906
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:623 → 655
      7WD40; WD40 repeat [structural motif]
      pfam00931
      Location:144 → 374
      NB-ARC; NB-ARC domain
      pfam17908
      Location:453 → 587
      APAF1_C; APAF-1 helical domain
      cl14633
      Location:7 → 91
      DD; Death Domain Superfamily of protein-protein interaction domains
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.