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    abhd16a abhydrolase domain containing 16A, phospholipase [ Danio rerio (zebrafish) ]

    Gene ID: 564613, updated on 27-Mar-2024

    Summary

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    Official Symbol
    abhd16aprovided by ZNC
    Official Full Name
    abhydrolase domain containing 16A, phospholipaseprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-010601-2
    See related
    Ensembl:ENSDARG00000078929 AllianceGenome:ZFIN:ZDB-GENE-010601-2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    bat5; bat5l; fb55e01; wu:fb55e01
    Summary
    Predicted to enable acylglycerol lipase activity; palmitoyl-(protein) hydrolase activity; and phospholipase activity. Predicted to be involved in monoacylglycerol catabolic process and phosphatidylserine catabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human ABHD16A (abhydrolase domain containing 16A, phospholipase). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See abhd16a in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (10477533..10516966, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (10586631..10626064, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107988037 Neighboring gene valyl-tRNA synthetase 1 Neighboring gene si:ch73-22o12.1 Neighboring gene g6f-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish. Sambrook JG, et al. BMC Genomics, 2005 Nov 4. PMID 16271140, Free PMC Article
    2. Analysis of the goldfish Carassius auratus olfactory epithelium transcriptome reveals the presence of numerous non-olfactory GPCR and putative receptors for progestin pheromones. Kolmakov NN, et al. BMC Genomics, 2008 Sep 20. PMID 18803863, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables acylglycerol lipase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables acylglycerol lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in monoacylglycerol catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in phosphatidylserine catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    phosphatidylserine lipase ABHD16A; protein ABHD16A
    Names
    HLA-B associated transcript 5, like
    NP_001104648.1
    XP_009290375.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111178.1 → NP_001104648.1  phosphatidylserine lipase ABHD16A

      See identical proteins and their annotated locations for NP_001104648.1

      Status: PROVISIONAL

      Source sequence(s)
      BC155562
      UniProtKB/TrEMBL
      A9JR90
      Related
      ENSDARP00000103741.2, ENSDART00000110606.3
      Conserved Domains (1) summary
      pfam12695
      Location:289 → 419
      Abhydrolase_5; Alpha/beta hydrolase family

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      10477533..10516966 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009292100.3 → XP_009290375.1  protein ABHD16A isoform X1

      UniProtKB/TrEMBL
      A0A8M3AQC5
      Conserved Domains (1) summary
      pfam12695
      Location:85 → 215
      Abhydrolase_5; Alpha/beta hydrolase family
    Nucleotide Protein Strain
    Heading Accession and Version

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