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    XB5901519 provisional ortholog of tumor protein p63 regulated 1 like [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100127624, updated on 25-Jan-2024

    Summary

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    Symbol
    XB5901519provided by Xenbase
    Full Name
    provisional ortholog of tumor protein p63 regulated 1 likeprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5901520
    See related
    Ensembl:ENSXETG00000043473
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    tprg1l
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    Genomic context

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    See XB5901519 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (9675094..9681156, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (1363009..1369831, complement)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), beta polypeptide 3 Neighboring gene prolyl 3-hydroxylase 3 Neighboring gene G protein-coupled receptor 162 Neighboring gene cd4 receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables procollagen-proline 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tumor protein p63-regulated gene 1-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      9675094..9681156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012967639.3 → XP_012823093.1  tumor protein p63-regulated gene 1-like protein

      UniProtKB/TrEMBL
      A8E5W2, F7ELP4
      Related
      ENSXETP00000025258.5, ENSXETT00000025258.5
      Conserved Domains (1) summary
      pfam12456
      Location:53 → 154
      hSac2; Inositol phosphatase
    Nucleotide Protein Strain
    Heading Accession and Version

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