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    AFF2 ALF transcription elongation factor 2 [ Equus caballus (horse) ]

    Gene ID: 100055437, updated on 8-Mar-2024

    Summary

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    Official Symbol
    AFF2provided by VGNC
    Official Full Name
    ALF transcription elongation factor 2provided by VGNC
    Primary source
    VGNC:VGNC:15145
    See related
    Ensembl:ENSECAG00000021132
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See AFF2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) X NC_009175.3 (121798004..122269793)
    102 previous assembly EquCab2.0 (GCF_000002305.2) X NC_009175.2 (117587164..117923495)

    Chromosome X - NC_009175.3Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA1 Neighboring gene FMR1 neighbor Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene uncharacterized LOC111771523 Neighboring gene heat shock transcription factor, X-linked member 3-like Neighboring gene iduronate 2-sulfatase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G-quadruplex RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AF4/FMR2 family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009175.3 Reference EquCab3.0 Primary Assembly

      Range
      121798004..122269793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023633609.1 → XP_023489377.1  AF4/FMR2 family member 2 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2GZY9
      Related
      ENSECAP00000018897.4, ENSECAT00000022840.4
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1304
      AF-4; AF-4 proto-oncoprotein

    2. XM_023633611.1 → XP_023489379.1  AF4/FMR2 family member 2 isoform X3

      UniProtKB/TrEMBL
      F6RWX7
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1275
      AF-4; AF-4 proto-oncoprotein

    3. XM_023633610.1 → XP_023489378.1  AF4/FMR2 family member 2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q2GUL4, A0A3Q2GZY9
      Related
      ENSECAP00000024057.2, ENSECAT00000038507.2
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1300
      AF-4; AF-4 proto-oncoprotein

    4. XM_023633612.1 → XP_023489380.1  AF4/FMR2 family member 2 isoform X4

      UniProtKB/TrEMBL
      F6RWX7
      Related
      ENSECAP00000018901.3, ENSECAT00000022844.4
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1271
      AF-4; AF-4 proto-oncoprotein
    Nucleotide Protein
    Heading Accession and Version

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