U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    TVAGG3_0568480 U3 snoRNA binding [ Trichomonas vaginalis G3 ]

    Gene ID: 4754511, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    TVAGG3_0568480
    Gene description
    U3 snoRNA binding
    Primary source
    TrichDB:TVAGG3_0568480
    Locus tag
    TVAGG3_0568480
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Trichomonas vaginalis G3 (strain: G3, nat-host: Homo sapiens, culture-collection: ATCC:PRA-98)
    Lineage
    Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas
    Old locus tag
    TVAG_2v0568480
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TVAGG3_0568480 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_067204.1 (18754858..18756647, complement)

    Chromosome II - NC_067204.1Genomic Context describing neighboring genes Neighboring gene protein of unknown function, DUF4106 family Neighboring gene guanyl-nucleotide exchange factor protein Neighboring gene peroxiredoxin protein Neighboring gene armadillo (ARM) repeat-containing protein family

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_067204.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Carlton JM, et al. Science, 2007 Jan 12. PMID 17218520, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    • replaces TrichDB:TVAG_075430

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U3 snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    U3 snoRNA binding
    XP_001309667.1
    • eggNOG seed ortholog:5722.XP_001309667.1;replaces TrichDB:TVAG_075430

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_067204.1 Reference assembly

      Range
      18754858..18756647 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001309666.2 → XP_001309667.1  U3 snoRNA binding [Trichomonas vaginalis G3]

      See identical proteins and their annotated locations for XP_001309667.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A2FEF0
      Conserved Domains (1) summary
      pfam06862
      Location:117 → 555
      UTP25; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases