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    Trpc5 transient receptor potential cation channel subfamily C member 5 [ Mus caroli (Ryukyu mouse) ]

    Gene ID: 110286568, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Trpc5
    Gene description
    transient receptor potential cation channel subfamily C member 5
    See related
    Ensembl:MGP_CAROLIEiJ_G0033474
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus caroli
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    human mouse all
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    Genomic context

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    See Trpc5 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) X NC_034589.1 (132827268..133113631, complement)

    Chromosome X - NC_034589.1Genomic Context describing neighboring genes Neighboring gene elongation factor 2 pseudogene Neighboring gene ALG13 UDP-N-acetylglucosaminyltransferase subunit Neighboring gene TRPC5 opposite strand Neighboring gene melanoma-associated antigen B16-like Neighboring gene retrotransposon Gag like 4 Neighboring gene COMM domain-containing protein 2 pseudogene Neighboring gene U11 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034589.1 Chromosome X Reference CAROLI_EIJ_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol 1,4,5 trisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables store-operated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in manganese ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cation channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short transient receptor potential channel 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAROLI_EIJ_v1.1 Primary Assembly

    Genomic

    1. NC_034589.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

      Range
      132827268..133113631 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021152996.2 → XP_021008655.1  short transient receptor potential channel 5

      UniProtKB/TrEMBL
      A0A6P5NYL6
      Related
      MGP_CAROLIEiJ_P0092938, MGP_CAROLIEiJ_T0092938.1
      Conserved Domains (2) summary
      TIGR00870
      Location:17 → 756
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:69 → 98
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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