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    ARFIP1 ADP ribosylation factor interacting protein 1 [ Sus scrofa (pig) ]

    Gene ID: 100518024, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ARFIP1provided by VGNC
    Official Full Name
    ADP ribosylation factor interacting protein 1provided by VGNC
    Primary source
    VGNC:VGNC:85453
    See related
    Ensembl:ENSSSCG00000009010
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 11.1), kidney (RPKM 9.6) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ARFIP1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (76168731..76270554, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (80737499..80791563, complement)

    Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 2 Neighboring gene FH2 domain containing 1 Neighboring gene uncharacterized LOC110262136 Neighboring gene tigger transposable element derived 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in trans-Golgi network membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arfaptin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252233.1 → NP_001239162.1  arfaptin-1

      Status: VALIDATED

      Source sequence(s)
      AK230925
      UniProtKB/TrEMBL
      A0A4X1SRI0, A0A8D0HLG4, A0A8D0VLW1
      Conserved Domains (1) summary
      cd07660
      Location:155 → 355
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

      Range
      76168731..76270554 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021100361.1 → XP_020956020.1  arfaptin-1 isoform X2

      UniProtKB/TrEMBL
      A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
      Conserved Domains (1) summary
      cd07660
      Location:184 → 384
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    2. XM_021100360.1 → XP_020956019.1  arfaptin-1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1SRM6, A0A8D0PPW4
      Conserved Domains (1) summary
      cd07660
      Location:123 → 323
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    3. XM_021100370.1 → XP_020956029.1  arfaptin-1 isoform X4

      UniProtKB/TrEMBL
      A0A287B3V9, A0A4X1SPZ7, A0A8D0VP41
      Conserved Domains (1) summary
      cd07660
      Location:152 → 352
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    4. XM_021100367.1 → XP_020956026.1  arfaptin-1 isoform X3

      UniProtKB/TrEMBL
      A0A4X1SRI0, A0A8D0HLG4, A0A8D0VLW1
      Conserved Domains (1) summary
      cd07660
      Location:155 → 355
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    5. XM_021100374.1 → XP_020956033.1  arfaptin-1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1SRM6, A0A8D0PPW4
      Conserved Domains (1) summary
      cd07660
      Location:123 → 323
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    6. XM_021100371.1 → XP_020956030.1  arfaptin-1 isoform X4

      UniProtKB/TrEMBL
      A0A287B3V9, A0A4X1SPZ7, A0A8D0VP41
      Conserved Domains (1) summary
      cd07660
      Location:152 → 352
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    7. XM_021100377.1 → XP_020956036.1  arfaptin-1 isoform X5

      UniProtKB/TrEMBL
      A0A286ZPE2, A0A4X1SQQ3, A0A8D1G0K5, A0A8D1JVB1
      Related
      ENSSSCP00000033466.1, ENSSSCT00000059149.3
      Conserved Domains (1) summary
      cd07660
      Location:166 → 310
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    8. XM_021100362.1 → XP_020956021.1  arfaptin-1 isoform X2

      UniProtKB/TrEMBL
      A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
      Conserved Domains (1) summary
      cd07660
      Location:184 → 384
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    9. XM_021100375.1 → XP_020956034.1  arfaptin-1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1SRM6, A0A8D0PPW4
      Conserved Domains (1) summary
      cd07660
      Location:123 → 323
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    10. XM_021100368.1 → XP_020956027.1  arfaptin-1 isoform X3

      UniProtKB/TrEMBL
      A0A4X1SRI0, A0A8D0HLG4, A0A8D0VLW1
      Conserved Domains (1) summary
      cd07660
      Location:155 → 355
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    11. XM_021100372.1 → XP_020956031.1  arfaptin-1 isoform X4

      UniProtKB/TrEMBL
      A0A287B3V9, A0A4X1SPZ7, A0A8D0VP41
      Conserved Domains (1) summary
      cd07660
      Location:152 → 352
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    12. XM_021100363.1 → XP_020956022.1  arfaptin-1 isoform X2

      UniProtKB/TrEMBL
      A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
      Conserved Domains (1) summary
      cd07660
      Location:184 → 384
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    13. XM_021100376.1 → XP_020956035.1  arfaptin-1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1SRM6, A0A8D0PPW4
      Conserved Domains (1) summary
      cd07660
      Location:123 → 323
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    14. XM_021100369.1 → XP_020956028.1  arfaptin-1 isoform X3

      UniProtKB/TrEMBL
      A0A4X1SRI0, A0A8D0HLG4, A0A8D0VLW1
      Conserved Domains (1) summary
      cd07660
      Location:155 → 355
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    15. XM_021100364.1 → XP_020956023.1  arfaptin-1 isoform X2

      UniProtKB/TrEMBL
      A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
      Related
      ENSSSCP00000038734.2, ENSSSCT00000040238.3
      Conserved Domains (1) summary
      cd07660
      Location:184 → 384
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    16. XM_021100373.1 → XP_020956032.1  arfaptin-1 isoform X4

      UniProtKB/TrEMBL
      A0A287B3V9, A0A4X1SPZ7, A0A8D0VP41
      Related
      ENSSSCP00000050951.2, ENSSSCT00000059627.2
      Conserved Domains (1) summary
      cd07660
      Location:152 → 352
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    17. XM_021100366.1 → XP_020956025.1  arfaptin-1 isoform X2

      UniProtKB/TrEMBL
      A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
      Conserved Domains (1) summary
      cd07660
      Location:184 → 384
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    18. XM_021100365.1 → XP_020956024.1  arfaptin-1 isoform X2

      UniProtKB/TrEMBL
      A0A287A4N1, A0A480QV05, A0A4X1SPY6, A0A8D0VLZ8, A0A8D1GA74
      Conserved Domains (1) summary
      cd07660
      Location:184 → 384
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    19. XM_021100378.1 → XP_020956037.1  arfaptin-1 isoform X6

      Conserved Domains (1) summary
      cd07660
      Location:34 → 234
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin
    Nucleotide Protein
    Heading Accession and Version

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