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    micall1 MICAL like 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 779550, updated on 25-Apr-2024

    Summary

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    Official Symbol
    micall1provided by Xenbase
    Official Full Name
    MICAL like 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-493743
    See related
    Ensembl:ENSXETG00000006343
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    mirab13; mical-l1
    Orthologs
    human mouse all
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    Genomic context

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    See micall1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (122118692..122142243)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (111722648..111746073)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 54 Neighboring gene eukaryotic translation initiation factor 3 subunit L Neighboring gene chromosome 4 C22orf23 homolog Neighboring gene polymerase (RNA) II subunit F

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    MICAL-like protein 1
    Names
    novel LIM domain containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      122118692..122142243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002934234.5 → XP_002934280.2  MICAL-like protein 1

      See identical proteins and their annotated locations for XP_002934280.2

      UniProtKB/TrEMBL
      A0A8J1JIU5, F6SAH7
      Related
      ENSXETP00000116513.1, ENSXETT00000111518.1
      Conserved Domains (4) summary
      cd09444
      Location:153 → 207
      LIM_Mical_like_1; This domain belongs to the LIM domain family which are found on Mical (molecule interacting with CasL) like proteins
      PHA03247
      Location:230 → 594
      PHA03247; large tegument protein UL36; Provisional
      pfam12130
      Location:616 → 743
      DUF3585; Protein of unknown function (DUF3585)
      cd21252
      Location:3 → 109
      CH_MICALL1; calponin homology (CH) domain found in MICAL-like protein 1

    2. XM_031901085.1 → XP_031756945.1  MICAL-like protein 1

      UniProtKB/TrEMBL
      A0A8J1JIU5, F6SAH7
      Related
      ENSXETP00000013892.5, ENSXETT00000013892.5
      Conserved Domains (4) summary
      cd09444
      Location:153 → 207
      LIM_Mical_like_1; This domain belongs to the LIM domain family which are found on Mical (molecule interacting with CasL) like proteins
      PHA03247
      Location:230 → 594
      PHA03247; large tegument protein UL36; Provisional
      pfam12130
      Location:616 → 743
      DUF3585; Protein of unknown function (DUF3585)
      cd21252
      Location:3 → 109
      CH_MICALL1; calponin homology (CH) domain found in MICAL-like protein 1
    Nucleotide Protein Strain
    Heading Accession and Version

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