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    LINC02616 long intergenic non-protein coding RNA 2616 [ Homo sapiens (human) ]

    Gene ID: 100508631, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC02616provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2616provided by HGNC
    Primary source
    HGNC:HGNC:54078
    See related
    Ensembl:ENSG00000261761 AllianceGenome:HGNC:54078
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Annotation information
    Annotation category: suggests misassembly
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    4p14
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (37001779..37020706)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (36970245..36989163)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (37003401..37022328)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene microRNA 1255b-1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78488 Neighboring gene F-box protein 38 pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78504 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:36527157-36527318 Neighboring gene long intergenic non-protein coding RNA 2505 Neighboring gene MPRA-validated peak5020 silencer Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:36642697-36643366 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21411 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15346 Neighboring gene MPRA-validated peak5022 silencer Neighboring gene MPRA-validated peak5023 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21412 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78610 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78652 Neighboring gene uncharacterized LOC101928721 Neighboring gene uncharacterized LOC105374402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:37147574-37148074 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:37148075-37148575 Neighboring gene microRNA 4801

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134669.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL136537
      Related
      ENST00000562049.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      37001779..37020706
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      36970245..36989163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases