U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    ankrd13a ankyrin repeat domain 13A [ Lates calcarifer (barramundi perch) ]

    Gene ID: 108878331, updated on 10-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ankrd13a
    Gene description
    ankyrin repeat domain 13A
    See related
    EnsemblRapid:ENSLCAG00010028223
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lates calcarifer
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ankrd13a in Genome Data Viewer
    Location:
    chromosome: LG13
    Exon count:
    14
    Annotation release Status Assembly LG Location
    RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG13 NC_066845.1 (10639669..10646916, complement)
    100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367222.1 (13488200..13495444)

    Linkage Group LG13 - NC_066845.1Genomic Context describing neighboring genes Neighboring gene small G protein signaling modulator 1a Neighboring gene solute carrier family 6 member 4b Neighboring gene G protein-coupled receptor kinase interacting ArfGAP 2a Neighboring gene trichoplein, keratin filament binding

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
    2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ankyrin repeat domain-containing protein 13A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TLL_Latcal_v3 Primary Assembly

    Genomic

    1. NC_066845.1 Reference TLL_Latcal_v3 Primary Assembly

      Range
      10639669..10646916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051075332.1 → XP_050931289.1  ankyrin repeat domain-containing protein 13A isoform X1

    2. XM_018668924.2 → XP_018524440.1  ankyrin repeat domain-containing protein 13A isoform X2

      UniProtKB/TrEMBL
      A0A4W6GBC8, A0A4W6GCA9
      Related
      ENSLCAP00010060662.1, ENSLCAT00010062309.2
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.