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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001316684.2 → NP_001303613.1 SH3 domain-binding protein 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AL592169
- Consensus CDS
-
CCDS84176.1
- UniProtKB/Swiss-Prot
- A2A5V4, E9QMQ2, P55194, Q99KK8
- UniProtKB/TrEMBL
-
S4R2D3
- Related
- ENSMUSP00000001226.4, ENSMUST00000001226.11
- Conserved Domains (2) summary
-
- cd07620
Location:16 → 275
- BAR_SH3BP1; The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1
- cl02570
Location:272 → 473
- RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...
-
NM_001316685.2 → NP_001303614.1 SH3 domain-binding protein 1 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in its 3' coding region, compared to variant 1. The encoded isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AL592169
- Consensus CDS
-
CCDS84177.1
- UniProtKB/TrEMBL
- A2A5V2, S4R2D3
- Related
- ENSMUSP00000105320.3, ENSMUST00000109698.9
- Conserved Domains (2) summary
-
- cl02570
Location:272 → 473
- RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...
- cl12013
Location:16 → 275
- BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
-
NM_009164.4 → NP_033190.2 SH3 domain-binding protein 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses two alternate splice sites in its 3' coding region, compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AL592169
- Consensus CDS
-
CCDS27626.1
- UniProtKB/TrEMBL
- A2A5V3, S4R2D3
- Related
- ENSMUSP00000052181.8, ENSMUST00000061239.14
- Conserved Domains (2) summary
-
- cl02570
Location:272 → 473
- RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...
- cl12013
Location:16 → 275
- BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
RNA
-
NR_177652.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) uses an alternate splice site in a 5' exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL592169
-
NR_177653.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) has multiple differences compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL592169
- Related
-
ENSMUST00000151146.8
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000081.7 Reference GRCm39 C57BL/6J
- Range
-
78783994..78796247
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001316686.1: Suppressed sequence
- Description
- NM_001316686.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
-
NR_133564.1: Suppressed sequence
- Description
- NR_133564.1: This RefSeq was removed because currently there is insufficient support for the transcript.