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    atg10 ATG10 autophagy related 10 homolog (S. cerevisiae) [ Tachysurus fulvidraco (yellow catfish) ]

    Gene ID: 113638321, updated on 10-Apr-2024

    Summary

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    Gene symbol
    atg10
    Gene description
    ATG10 autophagy related 10 homolog (S. cerevisiae)
    See related
    EnsemblRapid:ENSTFUG00005005404
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tachysurus fulvidraco
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
    Orthologs
    human zebrafish all
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    Genomic context

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    See atg10 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current HZAU_PFXX_2.0 (GCF_022655615.1) 20 NC_062537.1 (6844817..6864489, complement)
    100 previous assembly ASM372403v1 (GCF_003724035.1) Unplaced Scaffold NW_020848277.1 (3345253..3364969, complement)

    Chromosome 20 - NC_062537.1Genomic Context describing neighboring genes Neighboring gene hyaluronan and proteoglycan link protein 1b Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 4 Neighboring gene transmembrane protein 167A Neighboring gene zinc finger, CCHC domain containing 9 Neighboring gene EKC/KEOPS complex subunit LAGE3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Zinc reduces hepatic lipid deposition and activates lipophagy via Zn(2+)/MTF-1/PPARα and Ca(2+)/CaMKKβ/AMPK pathways. Wei CC, et al. FASEB J, 2018 Jun 18. PMID 29912588

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Atg12 transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein lipidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein modification by small protein conjugation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-like-conjugating enzyme ATG10
    Names
    autophagy related 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tachysurus fulvidraco Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HZAU_PFXX_2.0

    Genomic

    1. NC_062537.1 Reference HZAU_PFXX_2.0

      Range
      6844817..6864489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027139378.2 → XP_026995179.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    2. XM_027139380.2 → XP_026995181.1  ubiquitin-like-conjugating enzyme ATG10 isoform X2

      UniProtKB/TrEMBL
      A0A3T0TV75
      Related
      ENSTFUP00005011326.1, ENSTFUT00005013917.1

    3. XM_027139379.2 → XP_026995180.1  ubiquitin-like-conjugating enzyme ATG10 isoform X2

      UniProtKB/TrEMBL
      A0A3T0TV75

    4. XM_027139377.2 → XP_026995178.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    5. XM_047804875.1 → XP_047660831.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    6. XM_027139374.2 → XP_026995175.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    7. XM_027139381.2 → XP_026995182.1  ubiquitin-like-conjugating enzyme ATG10 isoform X3

    8. XM_027139382.2 → XP_026995183.1  ubiquitin-like-conjugating enzyme ATG10 isoform X4

    9. XM_027139375.2 → XP_026995176.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    10. XM_047804874.1 → XP_047660830.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

      Related
      ENSTFUP00005011333.1, ENSTFUT00005013924.1
    Nucleotide Protein
    Heading Accession and Version

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