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    NR2E3 nuclear receptor subfamily 2 group E member 3 [ Canis lupus familiaris (dog) ]

    Gene ID: 487629, updated on 5-Mar-2024

    Summary

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    Gene symbol
    NR2E3
    Gene description
    nuclear receptor subfamily 2 group E member 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See NR2E3 in Genome Data Viewer
    Location:
    chromosome: 30
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (35578487..35588153)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (35309120..35318785)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (35811616..35821244)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (35529407..35539055)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (35561018..35567025)

    Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene thrombospondin type 1 domain containing 4 Neighboring gene microtubule-associated protein RP/EB family member 1-like Neighboring gene uncharacterized LOC102155082 Neighboring gene myosin IXA Neighboring gene U6 spliceosomal RNA Neighboring gene SUMO peptidase family member, NEDD8 specific

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photoreceptor-specific nuclear receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051834.1 Reference ROS_Cfam_1.0

      Range
      35578487..35588153
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038441752.1 → XP_038297680.1  photoreceptor-specific nuclear receptor isoform X1

      UniProtKB/TrEMBL
      A0A8C0K1U2
      Conserved Domains (2) summary
      cd06950
      Location:181 → 387
      NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors
      cd06970
      Location:40 → 130
      NR_DBD_PNR; DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049290.1 Alternate UMICH_Zoey_3.1

      Range
      35529407..35539055
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038517527.1 → XP_038373455.1  photoreceptor-specific nuclear receptor isoform X1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

      Range
      35561018..35567025
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038644102.1 → XP_038500030.1  photoreceptor-specific nuclear receptor isoform X2

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

      Range
      35811616..35821244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038579890.1 → XP_038435818.1  photoreceptor-specific nuclear receptor isoform X1

      UniProtKB/TrEMBL
      A0A8C0K1U2

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      35309120..35318785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038461065.1 → XP_038316993.1  photoreceptor-specific nuclear receptor isoform X1

      UniProtKB/TrEMBL
      A0A8C0K1U2
      Conserved Domains (2) summary
      cd06950
      Location:181 → 386
      NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors
      cd06970
      Location:40 → 130
      NR_DBD_PNR; DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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