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    ATP6V0D1 ATPase H+ transporting V0 subunit d1 [ Sus scrofa (pig) ]

    Gene ID: 100525048, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ATP6V0D1provided by VGNC
    Official Full Name
    ATPase H+ transporting V0 subunit d1provided by VGNC
    Primary source
    VGNC:VGNC:85667
    See related
    Ensembl:ENSSSCG00000002776
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in kidney (RPKM 50.3), lung (RPKM 45.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ATP6V0D1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (28090180..28132080, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (25357269..25399102, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type containing 1 Neighboring gene uncharacterized LOC110260944 Neighboring gene hydroxysteroid 11-beta dehydrogenase 2 Neighboring gene agouti related neuropeptide Neighboring gene RHO family interacting cell polarization regulator 1 Neighboring gene proline-rich protein HaeIII subfamily 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar acidification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of plasma membrane proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of vacuolar proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit d 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      28090180..28132080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003126946.4 → XP_003126994.1  V-type proton ATPase subunit d 1

      See identical proteins and their annotated locations for XP_003126994.1

      UniProtKB/TrEMBL
      A0A4X1UJS8, A0A8D0QB91, A0A8D0QBC3
      Related
      ENSSSCP00000002995.3, ENSSSCT00000003074.5
      Conserved Domains (1) summary
      pfam01992
      Location:16 → 344
      vATP-synt_AC39; ATP synthase (C/AC39) subunit
    Nucleotide Protein
    Heading Accession and Version

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