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    ASB16 ankyrin repeat and SOCS box containing 16 [ Sus scrofa (pig) ]

    Gene ID: 100514598, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ASB16provided by VGNC
    Official Full Name
    ankyrin repeat and SOCS box containing 16provided by VGNC
    Primary source
    VGNC:VGNC:98974
    See related
    Ensembl:ENSSSCG00000039673
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in longissimus dorsi muscle (RPKM 24.4), psoas major muscle (RPKM 14.7) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ASB16 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (19033471..19040481, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (19321709..19324766)

    Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene upstream binding transcription factor Neighboring gene ataxin 7 like 3 Neighboring gene transmembrane and ubiquitin like domain containing 2 Neighboring gene homologous recombination factor with OB-fold Neighboring gene histone deacetylase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat and SOCS box protein 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

      Range
      19033471..19040481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021066898.1 → XP_020922557.1  ankyrin repeat and SOCS box protein 16

      UniProtKB/TrEMBL
      A0A480DL53, A0A4X1TR36, A0A8D1M139, A0A8D1RFM9
      Related
      ENSSSCP00000051614.2, ENSSSCT00000059515.3
      Conserved Domains (5) summary
      cd00204
      Location:211 → 325
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd03716
      Location:503 → 544
      SOCS_ASB_like; SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable ...
      sd00045
      Location:240 → 270
      ANK; ANK repeat [structural motif]
      cl26072
      Location:141 → 279
      Ank_5; Ankyrin repeats (many copies)
      cl26073
      Location:241 → 429
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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