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    Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 [ Mus musculus (house mouse) ]

    Gene ID: 218756, updated on 25-Apr-2024

    Summary

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    Official Symbol
    Slc4a7provided by MGI
    Official Full Name
    solute carrier family 4, sodium bicarbonate cotransporter, member 7provided by MGI
    Primary source
    MGI:MGI:2443878
    See related
    Ensembl:ENSMUSG00000021733 AllianceGenome:MGI:2443878
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NBC3; NBCn1; NBCn1-G; E430014N10Rik; Tg(Thy1-SNCA)12Mjff
    Summary
    Predicted to enable sodium:bicarbonate symporter activity. Acts upstream of or within cochlear nucleus development; sensory organ development; and visual perception. Located in apical plasma membrane; basolateral plasma membrane; and cytoplasm. Is expressed in brain; metanephros; pancreas; and spiral ligament. Used to study Usher syndrome type 2C. Orthologous to human SLC4A7 (solute carrier family 4 member 7). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 6.9), CNS E14 (RPKM 6.6) and 27 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    14 A1; 14 7.08 cM
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (7669819..7766808, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (14703011..14799944)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_36001 Neighboring gene predicted gene, 18142 Neighboring gene predicted gene, 46441 Neighboring gene NIMA (never in mitosis gene a)- related kinase 10 Neighboring gene STARR-seq mESC enhancer starr_36000 Neighboring gene STARR-seq mESC enhancer starr_35999 Neighboring gene STARR-seq mESC enhancer starr_35997 Neighboring gene STARR-positive B cell enhancer ABC_E749 Neighboring gene STARR-seq mESC enhancer starr_35996 Neighboring gene predicted gene, 52165 Neighboring gene NSA2 ribosome biogenesis homolog pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Sodium bicarbonate cotransporter NBCn1/Slc4a7 affects locomotor activity and hearing in mice. Choi I, et al. Behav Brain Res, 2021 Mar 5. PMID 33321164, Free PMC Article
    2. Deletion of the Na/HCO(3) Transporter NBCn1 Protects Hippocampal Neurons from NMDA-induced Seizures and Neurotoxicity in Mice. Park HJ, et al. Sci Rep, 2019 Nov 5. PMID 31690738, Free PMC Article
    3. Na(+),HCO(3)(-)-cotransporter NBCn1 (Slc4a7) accelerates ErbB2-induced breast cancer development and tumor growth in mice. Lee S, et al. Oncogene, 2018 Oct. PMID 29907770
    4. Na+, HCO3--cotransporter NBCn1 increases pHi gradients, filopodia, and migration of smooth muscle cells and promotes arterial remodelling. Boedtkjer E, et al. Cardiovasc Res, 2016 Aug 1. PMID 27076468
    5. Disrupting Na⁺, HCO₃⁻-cotransporter NBCn1 (Slc4a7) delays murine breast cancer development. Lee S, et al. Oncogene, 2016 Apr 21. PMID 26212013

    See all (49) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Sodium bicarbonate cotransporter NBCn1/Slc4a7 affects locomotor activity and hearing in mice.
      Title: Sodium bicarbonate cotransporter NBCn1/Slc4a7 affects locomotor activity and hearing in mice.
    2. Increased Alcohol Consumption in Mice Lacking Sodium Bicarbonate Transporter NBCn1.
      Title: Increased Alcohol Consumption in Mice Lacking Sodium Bicarbonate Transporter NBCn1.
    3. Deletion of the Na/HCO3 Transporter NBCn1 Protects Hippocampal Neurons from NMDA-induced Seizures and Neurotoxicity in Mice.
      Title: Deletion of the Na/HCO(3) Transporter NBCn1 Protects Hippocampal Neurons from NMDA-induced Seizures and Neurotoxicity in Mice.
    4. Disruption of Slc4a10 results in loss of Slc4a7 expression specifically in inner ear fibrocytes but not in other tissues. At the ultrastructural level, mitochondria of spiral ligament knockout fibrocytes show severe alterations.
      Title: Early Hearing Loss upon Disruption of Slc4a10 in C57BL/6 Mice.
    5. NBCn1 regulates intracellular pH in ErbB2-induced breast cancer tissue by providing a pathway for cellular uptake of HCO3(-), which can neutralize metabolic acidic waste products
      Title: Na(+),HCO(3)(-)-cotransporter NBCn1 (Slc4a7) accelerates ErbB2-induced breast cancer development and tumor growth in mice.
    6. This study showed that extracellular acidification inhibits NBCn1 and NHE1 activity in VSMCs; NBCn1 is equivalently inhibited when pCO2 is raised or the bicarbonate level decreased. Lowering the sodium level inhibits NBCn1 and NHE1 markedly only below the typical physiological and pathophysiological range.
      Title: Extracellular acidosis and very low [Na(+) ] inhibit NBCn1- and NHE1-mediated net acid extrusion from mouse vascular smooth muscle cells.
    7. Under physiological conditions NBCn1 bicarbonateuptake raises VSMC pHi and promotes filopodia, VSMC migration, and hypertrophic inward remodelling. Propose that axial pHi gradients enhance VSMC migration whereas global acidification inhibits VSMC proliferation and media hypertrophy after carotid artery ligation.
      Title: Na+, HCO3--cotransporter NBCn1 increases pHi gradients, filopodia, and migration of smooth muscle cells and promotes arterial remodelling.
    8. NBCn1 facilitates acid extrusion from breast cancer tissue, maintains the alkaline intracellular environment and promotes aggressive cancer development and growth
      Title: Disrupting Na⁺, HCO₃⁻-cotransporter NBCn1 (Slc4a7) delays murine breast cancer development.
    9. The electroneutral Na+-HCO3- cotransporter NBCn1 plays an essential role in murine duodenal acid-base balance and colonic mucus layer build-up in vivo
      Title: Essential role of the electroneutral Na+-HCO3- cotransporter NBCn1 in murine duodenal acid-base balance and colonic mucus layer build-up in vivo.
    10. Slc4a7 is a major regulator of basal and FSK-stimulated duodenal HCO3 secretion
      Title: The electroneutral Na⁺:HCO₃⁻ cotransporter NBCn1 is a major pHi regulator in murine duodenum.
    Submit: New GeneRIF Correction See all GeneRIFs (15)

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • C330023F04, E430014N10Rik

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables monoatomic anion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sodium:bicarbonate symporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sodium:bicarbonate symporter activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables sodium:bicarbonate symporter activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables solute:inorganic anion antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in auditory receptor cell development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within auditory receptor cell development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in bicarbonate transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within camera-type eye photoreceptor cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cellular response to growth factor stimulus ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within cochlear nucleus development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in locomotory exploration behavior IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in monoatomic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in phagosome acidification ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in purine nucleotide biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in pyrimidine nucleotide biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of intracellular pH IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of intracellular pH IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within retina vasculature morphogenesis in camera-type eye IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within retinal cell programmed cell death IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in sensory perception of sound IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within sodium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within visual perception IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in apical plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in apical plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in basolateral plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in basolateral plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in basolateral plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasmic vesicle ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in stereocilium ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    sodium bicarbonate cotransporter 3
    Names
    Na-bicarbonate cotransporter
    sodium bicarbonate cotransporter NBCn1-A
    sodium bicarbonate cotransporter NBCn1-B
    sodium bicarbonate cotransporter NBCn1-D
    sodium bicarbonate cotransporter NBCn1-H
    sodium bicarbonate cotransporter NBCn1-c

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033270.2 → NP_001028442.2  sodium bicarbonate cotransporter 3 isoform 11

      See identical proteins and their annotated locations for NP_001028442.2

      Status: VALIDATED

      Source sequence(s)
      AC129580, CT025538
      Consensus CDS
      CCDS36810.1
      UniProtKB/Swiss-Prot
      Q3U5H7, Q8BTY2
      UniProtKB/TrEMBL
      F8VQC9
      Related
      ENSMUSP00000058313.7, ENSMUST00000057015.8
      Conserved Domains (4) summary
      TIGR00834
      Location:118 → 1016
      ae; anion exchange protein
      pfam00955
      Location:456 → 969
      HCO3_cotransp; HCO3- transporter family
      pfam07565
      Location:146 → 413
      Band_3_cyto; Band 3 cytoplasmic domain
      pfam10487
      Location:599 → 667
      Nup188; Nucleoporin subcomplex protein binding to Pom34

    2. NM_001360504.1 → NP_001347433.1  sodium bicarbonate cotransporter 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC129580, AK153567, BP761907, CD541823, CO430686, JX254910
      Consensus CDS
      CCDS88573.1
      UniProtKB/TrEMBL
      A0A286YCX2, A0A286YD14, J9RV59
      Related
      ENSMUSP00000153045.3, ENSMUST00000223761.3
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1139
      Band_3_cyto; Band 3 cytoplasmic domain

    3. NM_001360505.1 → NP_001347434.1  sodium bicarbonate cotransporter 3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC129580, AK153567, BP761907, CD541823, CO430686, JX254909
      UniProtKB/TrEMBL
      A0A286YCX2, J9RZB2
      Related
      ENSMUSP00000153180.3, ENSMUST00000223607.3
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1126
      Band_3_cyto; Band 3 cytoplasmic domain

    4. NM_001360506.1 → NP_001347435.1  sodium bicarbonate cotransporter 3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC129580, AK153567, BP761907, CD541823, CO430686, JX254908
      UniProtKB/TrEMBL
      A0A286YD46, J9S4N6
      Related
      ENSMUSP00000153084.3, ENSMUST00000223981.3
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1139
      Band_3_cyto; Band 3 cytoplasmic domain

    5. NM_001360508.1 → NP_001347437.1  sodium bicarbonate cotransporter 3 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC129580, BP761907, CD541823, CO430686, CT025538, JX254912
      UniProtKB/TrEMBL
      A0A286YDK8, J9S7F7
      Related
      ENSMUSP00000153470.3, ENSMUST00000224333.3
      Conserved Domains (1) summary
      cl26877
      Location:113 → 1134
      Band_3_cyto; Band 3 cytoplasmic domain

    6. NM_001360509.1 → NP_001347438.1  sodium bicarbonate cotransporter 3 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC129580, AK153567, BP761907, CD541823, CO430686, JX254911
      Consensus CDS
      CCDS88570.1
      UniProtKB/TrEMBL
      A0A286YD46, A0A286YDA9, J9RDH0
      Related
      ENSMUSP00000153166.3, ENSMUST00000225175.3
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1126
      Band_3_cyto; Band 3 cytoplasmic domain

    7. NM_001360510.1 → NP_001347439.1  sodium bicarbonate cotransporter 3 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC129580, BP761907, CD541823, CO430686, CT025538, HM624051
      Consensus CDS
      CCDS88576.1
      UniProtKB/TrEMBL
      A0A286YCU2, A0A286YDK8, E3UVT9
      Related
      ENSMUSP00000152950.3, ENSMUST00000224672.3
      Conserved Domains (1) summary
      cl26877
      Location:113 → 1121
      Band_3_cyto; Band 3 cytoplasmic domain

    8. NM_001360511.1 → NP_001347440.1  sodium bicarbonate cotransporter 3 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC129580, AK153567, BP761907, CD541823, CO430686, JQ349031
      Consensus CDS
      CCDS88574.1
      UniProtKB/Swiss-Prot
      Q3U5H7, Q8BTY2
      UniProtKB/TrEMBL
      A0A286YCH3, I1VGT4
      Related
      ENSMUSP00000152984.3, ENSMUST00000225238.3
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1036
      Band_3_cyto; Band 3 cytoplasmic domain

    9. NM_001360512.1 → NP_001347441.1  sodium bicarbonate cotransporter 3 isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC129580, BP761907, CD541823, CO430686, CT025538, JQ347261
      Consensus CDS
      CCDS88579.1
      UniProtKB/TrEMBL
      A0A286YDB4, H6WZF5, U3RKD2
      Related
      ENSMUSP00000153345.3, ENSMUST00000224952.3
      Conserved Domains (1) summary
      cl26877
      Location:113 → 1031
      Band_3_cyto; Band 3 cytoplasmic domain

    10. NM_001360513.1 → NP_001347442.1  sodium bicarbonate cotransporter 3 isoform 9

      Status: VALIDATED

      Source sequence(s)
      AC129580, AK153567, BP761907, CD541823, CO430686, JQ349032
      Consensus CDS
      CCDS88571.1
      UniProtKB/Swiss-Prot
      Q3U5H7, Q8BTY2
      UniProtKB/TrEMBL
      A0A286YED8, I1VGT5
      Related
      ENSMUSP00000153690.3, ENSMUST00000225979.3
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1023
      Band_3_cyto; Band 3 cytoplasmic domain

    11. NM_001360514.1 → NP_001347443.1  sodium bicarbonate cotransporter 3 isoform 10

      Status: VALIDATED

      Source sequence(s)
      AC129580, BP761907, CD541823, CO430686, CT025538, JQ349033
      Consensus CDS
      CCDS88577.1
      UniProtKB/Swiss-Prot
      Q3U5H7, Q8BTY2
      UniProtKB/TrEMBL
      A0A286YDZ8, I1VGT6
      Related
      ENSMUSP00000153648.3, ENSMUST00000223695.3
      Conserved Domains (1) summary
      cl26877
      Location:113 → 1018
      Band_3_cyto; Band 3 cytoplasmic domain

    12. NM_001360515.1 → NP_001347444.1  sodium bicarbonate cotransporter 3 isoform 12

      Status: VALIDATED

      Source sequence(s)
      AC129580, BP761907, CD541823, CO430686, CT025538, HM624050
      Consensus CDS
      CCDS88580.1
      UniProtKB/TrEMBL
      A0A286YCE1, E3UVT8, U3RKD2
      Related
      ENSMUSP00000152933.3, ENSMUST00000223740.3
      Conserved Domains (1) summary
      cl26877
      Location:113 → 1011
      Band_3_cyto; Band 3 cytoplasmic domain

    13. NM_001360516.1 → NP_001347445.1  sodium bicarbonate cotransporter 3 isoform 13

      Status: VALIDATED

      Source sequence(s)
      AC129580, AK153567, BP761907, CD541823, CO430686, GU386352
      Consensus CDS
      CCDS88572.1
      UniProtKB/Swiss-Prot
      Q3U5H7, Q8BTY2
      UniProtKB/TrEMBL
      A0A286YDX4, D3Y272
      Related
      ENSMUSP00000153597.3, ENSMUST00000225630.3
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1003
      Band_3_cyto; Band 3 cytoplasmic domain

    14. NM_001360517.1 → NP_001347446.1  sodium bicarbonate cotransporter 3 isoform 15

      Status: VALIDATED

      Source sequence(s)
      AC129580, AK153567, BP761907, CD541823, CO430686, GU386353
      Consensus CDS
      CCDS88575.1
      UniProtKB/TrEMBL
      A0A286YD46, A0A286YD88, D3Y273
      Related
      ENSMUSP00000153323.3, ENSMUST00000226079.3
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1016
      Band_3_cyto; Band 3 cytoplasmic domain

    15. NM_001360520.1 → NP_001347449.1  sodium bicarbonate cotransporter 3 isoform 14

      Status: VALIDATED

      Source sequence(s)
      AC129580, BP761907, CD541823, CO430686, CT025538, JQ344322
      Consensus CDS
      CCDS88578.1
      UniProtKB/Swiss-Prot
      Q3U5H7, Q8BTY2
      UniProtKB/TrEMBL
      A0A286YCQ1, H6WZ45
      Related
      ENSMUSP00000153093.3, ENSMUST00000224049.3
      Conserved Domains (1) summary
      cl26877
      Location:113 → 998
      Band_3_cyto; Band 3 cytoplasmic domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      7669819..7766808 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315953.2 → XP_017171442.1  sodium bicarbonate cotransporter 3 isoform X3

      UniProtKB/TrEMBL
      A0A286YD46
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1159
      Band_3_cyto; Band 3 cytoplasmic domain

    2. XM_006517998.2 → XP_006518061.1  sodium bicarbonate cotransporter 3 isoform X1

      UniProtKB/TrEMBL
      A0A286YCX2
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1159
      Band_3_cyto; Band 3 cytoplasmic domain

    3. XM_017315955.3 → XP_017171444.1  sodium bicarbonate cotransporter 3 isoform X4

      UniProtKB/TrEMBL
      A0A286YCX8, U3RF68
      Related
      ENSMUSP00000153185.3, ENSMUST00000224752.3
      Conserved Domains (1) summary
      cl26877
      Location:123 → 1131
      Band_3_cyto; Band 3 cytoplasmic domain

    4. XM_006517999.3 → XP_006518062.1  sodium bicarbonate cotransporter 3 isoform X2

      UniProtKB/TrEMBL
      A0A286YCX2
      Conserved Domains (1) summary
      cl26877
      Location:118 → 1146
      Band_3_cyto; Band 3 cytoplasmic domain

    RNA

    1. XR_001781108.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BTY2.2 GenPept UniProtKB/Swiss-Prot:Q8BTY2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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